Gene annotation
Transcriptome id Sobic.005G196800.1
Synonym Sb05g025380
Functional annotation membrane protein, putative, expressed
UniProt C5Y6Y4
Pfam PF06624
Panther DB PTHR15601 PTHR15601:SF5
NCBI CDD KOG3491; Predicted membrane protein
KEGG Orthology -
Gene Ontology GO:0005783; endoplasmic reticulum


Orthologs (automatic annotation)
TAIR AT1G27330 : Ribosome associated membrane protein RAMP4
RAP-DB (Rice) LOC_Os11g41875.2 : membrane protein, putative, expressed
MaizeGDB (Corn) Zm00025a015890
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.005G196800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G247300 "Ca ATPase, IIB type"(PubMedID : 22196357)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
2 Sobic.004G237800 glycosyl transferase 8 domain containing protein, putative, expressed -
3 Sobic.001G390300 OsCam1-1 - Calmodulin, expressed K02183: calmodulin
4 Sobic.002G338500 sugar transporter 1(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
5 Sobic.004G321300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
6 Sobic.006G183400 OsRhmbd11 - Putative Rhomboid homologue, expressed -
7 Sobic.003G382600 ARGOS, putative, expressed -
8 Sobic.003G043600 BAHD acyl transferase(PubMedID : 28944535)@transferase family protein, putative, expressed -
9 Sobic.002G055700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed K01183: chitinase
10 Sobic.009G184000 ICE-like protease p20 domain containing protein, putative, expressed -
11 Sobic.004G340900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsFBX70 - F-box domain containing protein, expressed -
12 Sobic.002G245100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@pirin, putative, expressed K06911: quercetin 2,3-dioxygenase
13 Sobic.002G353900 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
14 Sobic.009G159400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@universal stress protein domain containing protein, putative, expressed -
15 Sobic.001G112200 LTPL118 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
16 Sobic.002G336600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nucleoside transporter, putative, expressed K15014: SLC29A1_2_3, solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3
17 Sobic.001G046100 ribosomal protein, putative, expressed K02981: RP-S2e, small subunit ribosomal protein S2e
18 Sobic.008G139600 lectin-like receptor kinase, putative, expressed -
19 Sobic.002G356101 - -
20 Sobic.001G367600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic005G196800 Sobic005G196800 Sobic001G247300 Sobic001G247300 Sobic005G196800--Sobic001G247300 Sobic004G237800 Sobic004G237800 Sobic005G196800--Sobic004G237800 Sobic001G390300 Sobic001G390300 Sobic005G196800--Sobic001G390300 Sobic002G338500 Sobic002G338500 Sobic005G196800--Sobic002G338500 Sobic004G321300 Sobic004G321300 Sobic005G196800--Sobic004G321300 Sobic006G183400 Sobic006G183400 Sobic005G196800--Sobic006G183400 Sobic003G382600 Sobic003G382600 Sobic005G196800--Sobic003G382600 Sobic003G043600 Sobic003G043600 Sobic005G196800--Sobic003G043600 Sobic002G055700 Sobic002G055700 Sobic005G196800--Sobic002G055700 Sobic001G247300--Sobic005G196800 Sobic001G247300--Sobic003G043600 Sobic003G092900 Sobic003G092900 Sobic001G247300--Sobic003G092900 Sobic001G247300--Sobic004G237800 Sobic009G184000 Sobic009G184000 Sobic001G247300--Sobic009G184000 Sobic001G247300--Sobic006G183400 Sobic001G247300--Sobic002G338500 Sobic007G074000 Sobic007G074000 Sobic001G247300--Sobic007G074000 Sobic001G247300--Sobic003G382600 Sobic004G237800--Sobic007G074000 Sobic004G237800--Sobic004G321300 Sobic002G336600 Sobic002G336600 Sobic004G237800--Sobic002G336600 Sobic004G189400 Sobic004G189400 Sobic004G237800--Sobic004G189400 Sobic004G237800--Sobic002G055700 Sobic002G140400 Sobic002G140400 Sobic004G237800--Sobic002G140400 Sobic005G091500 Sobic005G091500 Sobic004G237800--Sobic005G091500 Sobic001G112200 Sobic001G112200 Sobic004G237800--Sobic001G112200 Sobic005G063100 Sobic005G063100 Sobic004G237800--Sobic005G063100 Sobic003G125650 Sobic003G125650 Sobic001G390300--Sobic003G125650 Sobic001G046100 Sobic001G046100 Sobic001G390300--Sobic001G046100 Sobic001G055600 Sobic001G055600 Sobic001G390300--Sobic001G055600 Sobic001G402050 Sobic001G402050 Sobic001G390300--Sobic001G402050 Sobic001G374700 Sobic001G374700 Sobic001G390300--Sobic001G374700 Sobic001G493001 Sobic001G493001 Sobic001G390300--Sobic001G493001 Sobic001G390300--Sobic005G196800 Sobic002G375100 Sobic002G375100 Sobic001G390300--Sobic002G375100 Sobic001G367600 Sobic001G367600 Sobic001G390300--Sobic001G367600 Sobic002G338500--Sobic003G043600 Sobic002G338500--Sobic003G382600 Sobic002G338500--Sobic002G055700 Sobic010G156500 Sobic010G156500 Sobic002G338500--Sobic010G156500 Sobic003G364300 Sobic003G364300 Sobic002G338500--Sobic003G364300 Sobic009G145500 Sobic009G145500 Sobic002G338500--Sobic009G145500 Sobic009G145700 Sobic009G145700 Sobic002G338500--Sobic009G145700 Sobic002G353900 Sobic002G353900 Sobic002G338500--Sobic002G353900 Sobic002G338500--Sobic005G196800 Sobic004G321300--Sobic004G237800 Sobic009G159400 Sobic009G159400 Sobic004G321300--Sobic009G159400 Sobic008G136400 Sobic008G136400 Sobic004G321300--Sobic008G136400 Sobic008G139600 Sobic008G139600 Sobic004G321300--Sobic008G139600 Sobic001G038900 Sobic001G038900 Sobic004G321300--Sobic001G038900 Sobic004G321300--Sobic002G055700 Sobic001G140900 Sobic001G140900 Sobic004G321300--Sobic001G140900 Sobic004G321300--Sobic005G091500 Sobic003G345100 Sobic003G345100 Sobic004G321300--Sobic003G345100 Sobic006G179500 Sobic006G179500 Sobic006G183400--Sobic006G179500 Sobic002G140300 Sobic002G140300 Sobic006G183400--Sobic002G140300 Sobic006G183400--Sobic005G196800 Sobic006G183400--Sobic001G247300 Sobic004G222500 Sobic004G222500 Sobic006G183400--Sobic004G222500 Sobic003G037800 Sobic003G037800 Sobic006G183400--Sobic003G037800 Sobic009G247900 Sobic009G247900 Sobic006G183400--Sobic009G247900 Sobic002G359300 Sobic002G359300 Sobic006G183400--Sobic002G359300 Sobic003G264500 Sobic003G264500 Sobic006G183400--Sobic003G264500 Sobic003G382600--Sobic002G055700 Sobic003G382600--Sobic004G189400 Sobic003G382600--Sobic002G338500 Sobic003G382600--Sobic002G353900 Sobic003G303100 Sobic003G303100 Sobic003G382600--Sobic003G303100 Sobic003G382600--Sobic004G237800 Sobic003G382600--Sobic005G091500 Sobic008G050600 Sobic008G050600 Sobic003G382600--Sobic008G050600 Sobic003G382600--Sobic003G043600 Sobic003G043600--Sobic002G338500 Sobic003G043600--Sobic009G145500 Sobic003G268600 Sobic003G268600 Sobic003G043600--Sobic003G268600 Sobic006G075400 Sobic006G075400 Sobic003G043600--Sobic006G075400 Sobic003G442100 Sobic003G442100 Sobic003G043600--Sobic003G442100 Sobic001G310600 Sobic001G310600 Sobic003G043600--Sobic001G310600 Sobic003G043600--Sobic009G184000 Sobic003G043600--Sobic009G145700 Sobic001G318700 Sobic001G318700 Sobic003G043600--Sobic001G318700 Sobic002G055700--Sobic003G303100 Sobic002G055700--Sobic003G382600 Sobic002G055700--Sobic004G237800 Sobic003G426400 Sobic003G426400 Sobic002G055700--Sobic003G426400 Sobic002G055700--Sobic002G353900 Sobic004G148200 Sobic004G148200 Sobic002G055700--Sobic004G148200 Sobic002G055700--Sobic004G189400 Sobic002G055700--Sobic002G338500 Sobic002G055700--Sobic001G367600
Octagon: transcription factors


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