Gene annotation
Transcriptome id Sobic.002G245100.1
Synonym Sb02g028180
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
pirin, putative, expressed
UniProt C5X3V1
Pfam PF02678 PF05726
Panther DB PTHR13903 PTHR13903:SF5
NCBI CDD -
KEGG Orthology K06911; quercetin 2,3-dioxygenase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G50590 : RmlC-like cupins superfamily protein
RAP-DB (Rice) LOC_Os09g31120.1 : pirin, putative, expressed
MaizeGDB (Corn) Zm00025a047432 , Zm00025a009010
Brachypodium KQJ90728 , KQJ90729
Barley HORVU5Hr1G092220.4 , HORVU5Hr1G092220.5 , HORVU5Hr1G092220.1 , HORVU5Hr1G092220.2 , HORVU5Hr1G092220.3 , HORVU5Hr1G072760.3 , HORVU5Hr1G072760.2 , HORVU5Hr1G072760.1 , HORVU5Hr1G072760.7 , HORVU5Hr1G072760.6 , HORVU5Hr1G072760.5 , HORVU5Hr1G072760.4 , HORVU5Hr1G120790.8 , HORVU5Hr1G120790.9 , HORVU5Hr1G120790.6 , HORVU5Hr1G120790.7 , HORVU5Hr1G120790.4 , HORVU5Hr1G120790.5 , HORVU5Hr1G120790.2 , HORVU5Hr1G120790.3 , HORVU5Hr1G120790.1 , HORVU5Hr1G120810.1 , HORVU5Hr1G120810.2 , HORVU5Hr1G120800.8 , HORVU5Hr1G120800.6 , HORVU5Hr1G120800.4 , HORVU5Hr1G120800.5 , HORVU5Hr1G120800.2 , HORVU5Hr1G120800.3 , HORVU5Hr1G120800.1
Wheat TraesCS5A02G262700 , TraesCS5D02G270300 , TraesCS5B02G261100 , TraesCS5B02G535800 , TraesCS5D02G533500 , TraesCS5B02G535900 , TraesCS5D02G533100 , TraesCS4A02G336200 , TraesCS4A02G336000 , TraesCS4A02G336000 , TraesCS4A02G336200
Populus -


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cDNA sequences
Sobic.002G245100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G018700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
2 Sobic.003G037800 transferase family protein, putative, expressed -
3 Sobic.004G237800 glycosyl transferase 8 domain containing protein, putative, expressed -
4 Sobic.002G202600 joka8, putative, expressed -
5 Sobic.005G196800 membrane protein, putative, expressed -
6 Sobic.004G340900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsFBX70 - F-box domain containing protein, expressed -
7 Sobic.004G321300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
8 Sobic.003G158500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@abscisic stress-ripening, putative, expressed -
9 Sobic.001G107400 helix-loop-helix DNA-binding domain containing protein, expressed -
10 Sobic.001G119000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
11 Sobic.003G430400 OsCML31 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
12 Sobic.003G192100 expressed protein -
13 Sobic.003G429000 NADPH quinone oxidoreductase, putative, expressed -
14 Sobic.005G091500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@permease domain containing protein, putative, expressed K06901: putative MFS transporter, AGZA family, xanthine/uracil permease
15 Sobic.002G055600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed K01183: chitinase
16 Sobic.001G247300 "Ca ATPase, IIB type"(PubMedID : 22196357)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
17 Sobic.002G356101 - -
18 Sobic.009G033700 protein kinase, putative, expressed K13436: pto-interacting protein 1
19 Sobic.009G159400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@universal stress protein domain containing protein, putative, expressed -
20 Sobic.002G017800 expressed protein -


Gene co-expression network
sample Sobic002G245100 Sobic002G245100 Sobic005G018700 Sobic005G018700 Sobic002G245100--Sobic005G018700 Sobic003G037800 Sobic003G037800 Sobic002G245100--Sobic003G037800 Sobic004G237800 Sobic004G237800 Sobic002G245100--Sobic004G237800 Sobic002G202600 Sobic002G202600 Sobic002G245100--Sobic002G202600 Sobic005G196800 Sobic005G196800 Sobic002G245100--Sobic005G196800 Sobic004G340900 Sobic004G340900 Sobic002G245100--Sobic004G340900 Sobic004G321300 Sobic004G321300 Sobic002G245100--Sobic004G321300 Sobic003G158500 Sobic003G158500 Sobic002G245100--Sobic003G158500 Sobic001G107400 Sobic001G107400 Sobic002G245100--Sobic001G107400 Sobic005G018700--Sobic002G245100 Sobic002G017800 Sobic002G017800 Sobic005G018700--Sobic002G017800 Sobic006G103000 Sobic006G103000 Sobic005G018700--Sobic006G103000 Sobic010G185000 Sobic010G185000 Sobic005G018700--Sobic010G185000 Sobic003G429000 Sobic003G429000 Sobic005G018700--Sobic003G429000 Sobic005G018700--Sobic003G037800 Sobic005G018700--Sobic004G340900 Sobic001G050100 Sobic001G050100 Sobic005G018700--Sobic001G050100 Sobic003G192100 Sobic003G192100 Sobic005G018700--Sobic003G192100 Sobic003G037800--Sobic003G429000 Sobic003G037800--Sobic002G245100 Sobic001G389000 Sobic001G389000 Sobic003G037800--Sobic001G389000 Sobic009G033700 Sobic009G033700 Sobic003G037800--Sobic009G033700 Sobic009G159400 Sobic009G159400 Sobic003G037800--Sobic009G159400 Sobic003G037800--Sobic005G018700 Sobic006G183400 Sobic006G183400 Sobic003G037800--Sobic006G183400 Sobic003G037800--Sobic004G321300 Sobic003G037800--Sobic004G340900 Sobic007G074000 Sobic007G074000 Sobic004G237800--Sobic007G074000 Sobic004G237800--Sobic004G321300 Sobic002G336600 Sobic002G336600 Sobic004G237800--Sobic002G336600 Sobic004G189400 Sobic004G189400 Sobic004G237800--Sobic004G189400 Sobic002G055700 Sobic002G055700 Sobic004G237800--Sobic002G055700 Sobic002G140400 Sobic002G140400 Sobic004G237800--Sobic002G140400 Sobic005G091500 Sobic005G091500 Sobic004G237800--Sobic005G091500 Sobic001G112200 Sobic001G112200 Sobic004G237800--Sobic001G112200 Sobic005G063100 Sobic005G063100 Sobic004G237800--Sobic005G063100 Sobic002G202600--Sobic002G245100 Sobic001G119000 Sobic001G119000 Sobic002G202600--Sobic001G119000 Sobic002G202600--Sobic003G037800 Sobic002G202600--Sobic001G389000 Sobic003G430400 Sobic003G430400 Sobic002G202600--Sobic003G430400 Sobic002G202600--Sobic003G158500 Sobic002G202600--Sobic003G429000 Sobic002G202600--Sobic009G159400 Sobic002G202600--Sobic005G018700 Sobic001G247300 Sobic001G247300 Sobic005G196800--Sobic001G247300 Sobic005G196800--Sobic004G237800 Sobic001G390300 Sobic001G390300 Sobic005G196800--Sobic001G390300 Sobic002G338500 Sobic002G338500 Sobic005G196800--Sobic002G338500 Sobic005G196800--Sobic004G321300 Sobic005G196800--Sobic006G183400 Sobic003G382600 Sobic003G382600 Sobic005G196800--Sobic003G382600 Sobic003G043600 Sobic003G043600 Sobic005G196800--Sobic003G043600 Sobic005G196800--Sobic002G055700 Sobic004G340900--Sobic009G159400 Sobic004G340900--Sobic002G017800 Sobic009G077800 Sobic009G077800 Sobic004G340900--Sobic009G077800 Sobic010G259600 Sobic010G259600 Sobic004G340900--Sobic010G259600 Sobic004G340900--Sobic001G389000 Sobic004G340900--Sobic005G018700 Sobic004G340900--Sobic004G321300 Sobic003G084400 Sobic003G084400 Sobic004G340900--Sobic003G084400 Sobic004G340900--Sobic005G196800 Sobic004G321300--Sobic004G237800 Sobic004G321300--Sobic009G159400 Sobic008G136400 Sobic008G136400 Sobic004G321300--Sobic008G136400 Sobic008G139600 Sobic008G139600 Sobic004G321300--Sobic008G139600 Sobic001G038900 Sobic001G038900 Sobic004G321300--Sobic001G038900 Sobic004G321300--Sobic002G055700 Sobic001G140900 Sobic001G140900 Sobic004G321300--Sobic001G140900 Sobic004G321300--Sobic005G091500 Sobic003G345100 Sobic003G345100 Sobic004G321300--Sobic003G345100 Sobic001G040200 Sobic001G040200 Sobic003G158500--Sobic001G040200 Sobic002G140300 Sobic002G140300 Sobic003G158500--Sobic002G140300 Sobic003G158500--Sobic002G245100 Sobic010G259300 Sobic010G259300 Sobic003G158500--Sobic010G259300 Sobic001G407800 Sobic001G407800 Sobic003G158500--Sobic001G407800 Sobic002G356101 Sobic002G356101 Sobic003G158500--Sobic002G356101 Sobic007G151100 Sobic007G151100 Sobic003G158500--Sobic007G151100 Sobic003G158500--Sobic003G430400 Sobic001G538866 Sobic001G538866 Sobic003G158500--Sobic001G538866 Sobic001G107400--Sobic002G245100 Sobic004G187900 Sobic004G187900 Sobic001G107400--Sobic004G187900 Sobic001G107400--Sobic003G037800 Sobic009G141800 Sobic009G141800 Sobic001G107400--Sobic009G141800 Sobic001G107400--Sobic003G429000 Sobic001G107400--Sobic005G018700 Sobic001G281400 Sobic001G281400 Sobic001G107400--Sobic001G281400 Sobic001G107400--Sobic004G321300 Sobic001G107400--Sobic009G159400
Octagon: transcription factors


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