Gene annotation
Transcriptome id Sobic.001G119000.1
Synonym ARPN, Sb01g010500
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
plastocyanin-like domain containing protein, putative, expressed
UniProt C5WN51
Pfam PF02298
Panther DB PTHR33021 PTHR33021:SF61
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0009055; electron transfer activity


Orthologs (automatic annotation)
TAIR AT2G02850 : plantacyanin
RAP-DB (Rice) LOC_Os03g50160.1 : plastocyanin-like domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a017007 , Zm00025a021918 , Zm00025a007816
Brachypodium KQK13600
Barley HORVU4Hr1G021320.2 , HORVU4Hr1G007220.2 , HORVU4Hr1G007220.1 , HORVU7Hr1G042300.4 , HORVU7Hr1G042300.1 , HORVU7Hr1G042300.3
Wheat TraesCS4A02G199100 , TraesCS4A02G269400 , TraesCS4D02G042200 , TraesCS7B02G114700 , TraesCS4B02G116300 , TraesCS4B02G044700 , TraesCS4D02G113900 , TraesCS7D02G210300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G119100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
2 Sobic.005G091500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@permease domain containing protein, putative, expressed K06901: putative MFS transporter, AGZA family, xanthine/uracil permease
3 Sobic.002G183200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
4 Sobic.002G245100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@pirin, putative, expressed K06911: quercetin 2,3-dioxygenase
5 Sobic.001G252300 pectinesterase, putative, expressed K01051: pectinesterase
6 Sobic.002G055600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed K01183: chitinase
7 Sobic.004G189400 expressed protein -
8 Sobic.004G166700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Beta-fructofuranosidase, cell wall Invertase 2 (Os)"(PubMedID : 27208977)@glycosyl hydrolases, putative, expressed K01193: INV, beta-fructofuranosidase
9 Sobic.001G389000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@WRKY55, expressed -
10 Sobic.005G103300 dehydrogenase, putative, expressed K18857: alcohol dehydrogenase class-P
11 Sobic.009G159400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@universal stress protein domain containing protein, putative, expressed -
12 Sobic.002G202600 joka8, putative, expressed -
13 Sobic.002G359300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@ZOS7-07 - C2H2 zinc finger protein, expressed -
14 Sobic.004G237800 glycosyl transferase 8 domain containing protein, putative, expressed -
15 Sobic.004G208700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CHIT1 - Chitinase family protein precursor, expressed K01183: chitinase
16 Sobic.007G145600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@4-Coumarate-CoA ligase(PubMedID : 22313236)@AMP-binding domain containing protein, expressed K01904: 4-coumarate--CoA ligase
17 Sobic.004G321300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
18 Sobic.001G325400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
19 Sobic.003G334600 NAC domain transcription factor, putative, expressed -
20 Sobic.002G140400 plastocyanin-like domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G119000 Sobic001G119000 Sobic001G119100 Sobic001G119100 Sobic001G119000--Sobic001G119100 Sobic005G091500 Sobic005G091500 Sobic001G119000--Sobic005G091500 Sobic002G183200 Sobic002G183200 Sobic001G119000--Sobic002G183200 Sobic002G245100 Sobic002G245100 Sobic001G119000--Sobic002G245100 Sobic001G252300 Sobic001G252300 Sobic001G119000--Sobic001G252300 Sobic002G055600 Sobic002G055600 Sobic001G119000--Sobic002G055600 Sobic004G189400 Sobic004G189400 Sobic001G119000--Sobic004G189400 Sobic004G166700 Sobic004G166700 Sobic001G119000--Sobic004G166700 Sobic001G389000 Sobic001G389000 Sobic001G119000--Sobic001G389000 Sobic001G119100--Sobic001G119000 Sobic001G119100--Sobic002G183200 Sobic003G227300 Sobic003G227300 Sobic001G119100--Sobic003G227300 Sobic007G145600 Sobic007G145600 Sobic001G119100--Sobic007G145600 Sobic001G119100--Sobic005G091500 Sobic001G119100--Sobic004G189400 Sobic010G084400 Sobic010G084400 Sobic001G119100--Sobic010G084400 Sobic007G061300 Sobic007G061300 Sobic001G119100--Sobic007G061300 Sobic001G339700 Sobic001G339700 Sobic001G119100--Sobic001G339700 Sobic005G091500--Sobic004G189400 Sobic004G237800 Sobic004G237800 Sobic005G091500--Sobic004G237800 Sobic005G063100 Sobic005G063100 Sobic005G091500--Sobic005G063100 Sobic008G050600 Sobic008G050600 Sobic005G091500--Sobic008G050600 Sobic002G055700 Sobic002G055700 Sobic005G091500--Sobic002G055700 Sobic006G099900 Sobic006G099900 Sobic005G091500--Sobic006G099900 Sobic003G382600 Sobic003G382600 Sobic005G091500--Sobic003G382600 Sobic009G159400 Sobic009G159400 Sobic005G091500--Sobic009G159400 Sobic003G286600 Sobic003G286600 Sobic005G091500--Sobic003G286600 Sobic002G183200--Sobic003G286600 Sobic002G183200--Sobic005G091500 Sobic002G183200--Sobic004G189400 Sobic001G025300 Sobic001G025300 Sobic002G183200--Sobic001G025300 Sobic002G183200--Sobic001G119100 Sobic010G176600 Sobic010G176600 Sobic002G183200--Sobic010G176600 Sobic002G183200--Sobic006G099900 Sobic001G317200 Sobic001G317200 Sobic002G183200--Sobic001G317200 Sobic002G183200--Sobic010G084400 Sobic005G018700 Sobic005G018700 Sobic002G245100--Sobic005G018700 Sobic003G037800 Sobic003G037800 Sobic002G245100--Sobic003G037800 Sobic002G245100--Sobic004G237800 Sobic002G202600 Sobic002G202600 Sobic002G245100--Sobic002G202600 Sobic005G196800 Sobic005G196800 Sobic002G245100--Sobic005G196800 Sobic004G340900 Sobic004G340900 Sobic002G245100--Sobic004G340900 Sobic004G321300 Sobic004G321300 Sobic002G245100--Sobic004G321300 Sobic003G158500 Sobic003G158500 Sobic002G245100--Sobic003G158500 Sobic001G107400 Sobic001G107400 Sobic002G245100--Sobic001G107400 Sobic002G414600 Sobic002G414600 Sobic001G252300--Sobic002G414600 Sobic001G252300--Sobic004G166700 Sobic005G051200 Sobic005G051200 Sobic001G252300--Sobic005G051200 Sobic004G208700 Sobic004G208700 Sobic001G252300--Sobic004G208700 Sobic001G252300--Sobic001G317200 Sobic003G297600 Sobic003G297600 Sobic001G252300--Sobic003G297600 Sobic002G416600 Sobic002G416600 Sobic001G252300--Sobic002G416600 Sobic001G252300--Sobic008G050600 Sobic001G252300--Sobic003G286600 Sobic002G055600--Sobic004G237800 Sobic002G055600--Sobic005G091500 Sobic008G136400 Sobic008G136400 Sobic002G055600--Sobic008G136400 Sobic002G055600--Sobic004G321300 Sobic002G055600--Sobic004G189400 Sobic002G055600--Sobic002G055700 Sobic003G334600 Sobic003G334600 Sobic002G055600--Sobic003G334600 Sobic002G055600--Sobic002G183200 Sobic004G189500 Sobic004G189500 Sobic002G055600--Sobic004G189500 Sobic002G140400 Sobic002G140400 Sobic004G189400--Sobic002G140400 Sobic004G189400--Sobic005G091500 Sobic002G263400 Sobic002G263400 Sobic004G189400--Sobic002G263400 Sobic004G189400--Sobic008G050600 Sobic004G189400--Sobic004G237800 Sobic004G189400--Sobic003G382600 Sobic004G189400--Sobic006G099900 Sobic004G189400--Sobic008G136400 Sobic005G029200 Sobic005G029200 Sobic004G189400--Sobic005G029200 Sobic004G166700--Sobic001G252300 Sobic009G229000 Sobic009G229000 Sobic004G166700--Sobic009G229000 Sobic004G166700--Sobic002G416600 Sobic009G234100 Sobic009G234100 Sobic004G166700--Sobic009G234100 Sobic004G166700--Sobic005G051200 Sobic004G166700--Sobic004G208700 Sobic006G092500 Sobic006G092500 Sobic004G166700--Sobic006G092500 Sobic003G345100 Sobic003G345100 Sobic004G166700--Sobic003G345100 Sobic004G166700--Sobic005G063100 Sobic001G389000--Sobic009G159400 Sobic001G389000--Sobic003G037800 Sobic004G101300 Sobic004G101300 Sobic001G389000--Sobic004G101300 Sobic001G389000--Sobic004G340900 Sobic010G259600 Sobic010G259600 Sobic001G389000--Sobic010G259600 Sobic001G389000--Sobic006G092500 Sobic001G139100 Sobic001G139100 Sobic001G389000--Sobic001G139100 Sobic001G038900 Sobic001G038900 Sobic001G389000--Sobic001G038900 Sobic003G429000 Sobic003G429000 Sobic001G389000--Sobic003G429000
Octagon: transcription factors


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