Gene annotation
Transcriptome id Sobic.002G202600.1,Sobic.002G202600.2
Synonym LRL1, Sb02g024750
Functional annotation joka8, putative, expressed
UniProt A0A1W0W528 , A0A1W0W579
Pfam PF00010
Panther DB PTHR16223 PTHR16223:SF45
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G24260 : LJRHL1-like 1
RAP-DB (Rice) LOC_Os09g25040.1 : joka8, putative, expressed
MaizeGDB (Corn) Zm00025a013906 , Zm00025a022466 , Zm00025a045188 , Zm00025a046998 , Zm00025a049780
Brachypodium KQJ90250 , KQJ90251 , KQK19280 , PNT64574 , PNT64575 , PNT64576 , PNT64577 , KQJ90249 , KQJ90248 , KQK14025
Barley HORVU7Hr1G030250.12 , HORVU7Hr1G030250.11 , HORVU7Hr1G030250.10 , HORVU5Hr1G065450.23 , HORVU5Hr1G011780.11 , HORVU1Hr1G054260.8 , HORVU1Hr1G054260.9 , HORVU1Hr1G054260.2 , HORVU1Hr1G054260.3 , HORVU1Hr1G054260.1 , HORVU1Hr1G054260.6 , HORVU1Hr1G054260.4 , HORVU1Hr1G054260.5 , HORVU7Hr1G030250.3 , HORVU7Hr1G030250.2 , HORVU7Hr1G030250.1 , HORVU7Hr1G030250.7 , HORVU7Hr1G030250.6 , HORVU7Hr1G030250.5 , HORVU7Hr1G030250.4 , HORVU7Hr1G030250.9 , HORVU7Hr1G030250.8 , HORVU5Hr1G065450.17 , HORVU5Hr1G065450.20 , HORVU5Hr1G065450.21 , HORVU5Hr1G065450.22 , HORVU5Hr1G065450.24 , HORVU5Hr1G065450.25 , HORVU5Hr1G065450.27 , HORVU5Hr1G065450.28 , HORVU5Hr1G065450.29 , HORVU5Hr1G065450.1 , HORVU5Hr1G065450.2 , HORVU5Hr1G065450.5 , HORVU5Hr1G065450.4 , HORVU5Hr1G065450.6 , HORVU5Hr1G065450.9 , HORVU5Hr1G065450.8 , HORVU5Hr1G065450.3 , HORVU5Hr1G065450.7 , HORVU1Hr1G054260.18 , HORVU1Hr1G054260.19 , HORVU1Hr1G054260.10 , HORVU1Hr1G054260.11 , HORVU1Hr1G054260.12 , HORVU1Hr1G054260.14 , HORVU1Hr1G054260.15 , HORVU1Hr1G054260.16 , HORVU1Hr1G054260.17 , HORVU5Hr1G065450.15 , HORVU5Hr1G065450.14 , HORVU5Hr1G065450.16 , HORVU5Hr1G065450.11 , HORVU5Hr1G065450.10 , HORVU5Hr1G065450.13 , HORVU5Hr1G065450.12 , HORVU5Hr1G065450.19 , HORVU5Hr1G065450.18
Wheat TraesCS7D02G149400 , TraesCS5D02G233000 , TraesCS5A02G225700 , TraesCS5A02G225700 , TraesCS5B02G224200 , TraesCS7A02G147500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G245100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@pirin, putative, expressed K06911: quercetin 2,3-dioxygenase
2 Sobic.001G119000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
3 Sobic.003G037800 transferase family protein, putative, expressed -
4 Sobic.001G389000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@WRKY55, expressed -
5 Sobic.003G430400 OsCML31 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
6 Sobic.003G158500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@abscisic stress-ripening, putative, expressed -
7 Sobic.003G429000 NADPH quinone oxidoreductase, putative, expressed -
8 Sobic.009G159400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@universal stress protein domain containing protein, putative, expressed -
9 Sobic.005G018700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
10 Sobic.003G264500 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
11 Sobic.004G259366 - -
12 Sobic.002G356101 - -
13 Sobic.004G065500 chorismate mutase, chloroplast precursor, putative, expressed K01850: chorismate mutase
14 Sobic.001G516600 AMP-binding domain containing protein, expressed K10526: OPC-8:0 CoA ligase 1
15 Sobic.007G151100 12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
16 Sobic.001G040200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAC domain-containing protein 67, putative, expressed -
17 Sobic.005G091500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@permease domain containing protein, putative, expressed K06901: putative MFS transporter, AGZA family, xanthine/uracil permease
18 Sobic.001G247300 "Ca ATPase, IIB type"(PubMedID : 22196357)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
19 Sobic.004G321300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
20 Sobic.006G089300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR2, putative, expressed -


Gene co-expression network
sample Sobic002G202600 Sobic002G202600 Sobic002G245100 Sobic002G245100 Sobic002G202600--Sobic002G245100 Sobic001G119000 Sobic001G119000 Sobic002G202600--Sobic001G119000 Sobic003G037800 Sobic003G037800 Sobic002G202600--Sobic003G037800 Sobic001G389000 Sobic001G389000 Sobic002G202600--Sobic001G389000 Sobic003G430400 Sobic003G430400 Sobic002G202600--Sobic003G430400 Sobic003G158500 Sobic003G158500 Sobic002G202600--Sobic003G158500 Sobic003G429000 Sobic003G429000 Sobic002G202600--Sobic003G429000 Sobic009G159400 Sobic009G159400 Sobic002G202600--Sobic009G159400 Sobic005G018700 Sobic005G018700 Sobic002G202600--Sobic005G018700 Sobic002G245100--Sobic005G018700 Sobic002G245100--Sobic003G037800 Sobic004G237800 Sobic004G237800 Sobic002G245100--Sobic004G237800 Sobic002G245100--Sobic002G202600 Sobic005G196800 Sobic005G196800 Sobic002G245100--Sobic005G196800 Sobic004G340900 Sobic004G340900 Sobic002G245100--Sobic004G340900 Sobic004G321300 Sobic004G321300 Sobic002G245100--Sobic004G321300 Sobic002G245100--Sobic003G158500 Sobic001G107400 Sobic001G107400 Sobic002G245100--Sobic001G107400 Sobic001G119100 Sobic001G119100 Sobic001G119000--Sobic001G119100 Sobic005G091500 Sobic005G091500 Sobic001G119000--Sobic005G091500 Sobic002G183200 Sobic002G183200 Sobic001G119000--Sobic002G183200 Sobic001G119000--Sobic002G245100 Sobic001G252300 Sobic001G252300 Sobic001G119000--Sobic001G252300 Sobic002G055600 Sobic002G055600 Sobic001G119000--Sobic002G055600 Sobic004G189400 Sobic004G189400 Sobic001G119000--Sobic004G189400 Sobic004G166700 Sobic004G166700 Sobic001G119000--Sobic004G166700 Sobic001G119000--Sobic001G389000 Sobic003G037800--Sobic003G429000 Sobic003G037800--Sobic002G245100 Sobic003G037800--Sobic001G389000 Sobic009G033700 Sobic009G033700 Sobic003G037800--Sobic009G033700 Sobic003G037800--Sobic009G159400 Sobic003G037800--Sobic005G018700 Sobic006G183400 Sobic006G183400 Sobic003G037800--Sobic006G183400 Sobic003G037800--Sobic004G321300 Sobic003G037800--Sobic004G340900 Sobic001G389000--Sobic009G159400 Sobic001G389000--Sobic003G037800 Sobic004G101300 Sobic004G101300 Sobic001G389000--Sobic004G101300 Sobic001G389000--Sobic004G340900 Sobic010G259600 Sobic010G259600 Sobic001G389000--Sobic010G259600 Sobic006G092500 Sobic006G092500 Sobic001G389000--Sobic006G092500 Sobic001G139100 Sobic001G139100 Sobic001G389000--Sobic001G139100 Sobic001G038900 Sobic001G038900 Sobic001G389000--Sobic001G038900 Sobic001G389000--Sobic003G429000 Sobic002G263400 Sobic002G263400 Sobic003G430400--Sobic002G263400 Sobic002G140400 Sobic002G140400 Sobic003G430400--Sobic002G140400 Sobic001G040200 Sobic001G040200 Sobic003G430400--Sobic001G040200 Sobic006G066200 Sobic006G066200 Sobic003G430400--Sobic006G066200 Sobic002G140300 Sobic002G140300 Sobic003G430400--Sobic002G140300 Sobic007G074000 Sobic007G074000 Sobic003G430400--Sobic007G074000 Sobic003G092900 Sobic003G092900 Sobic003G430400--Sobic003G092900 Sobic002G356101 Sobic002G356101 Sobic003G430400--Sobic002G356101 Sobic004G222500 Sobic004G222500 Sobic003G430400--Sobic004G222500 Sobic003G158500--Sobic001G040200 Sobic003G158500--Sobic002G140300 Sobic003G158500--Sobic002G245100 Sobic010G259300 Sobic010G259300 Sobic003G158500--Sobic010G259300 Sobic001G407800 Sobic001G407800 Sobic003G158500--Sobic001G407800 Sobic003G158500--Sobic002G356101 Sobic007G151100 Sobic007G151100 Sobic003G158500--Sobic007G151100 Sobic003G158500--Sobic003G430400 Sobic001G538866 Sobic001G538866 Sobic003G158500--Sobic001G538866 Sobic003G429000--Sobic003G037800 Sobic003G429000--Sobic005G018700 Sobic001G050100 Sobic001G050100 Sobic003G429000--Sobic001G050100 Sobic003G429000--Sobic001G389000 Sobic002G329000 Sobic002G329000 Sobic003G429000--Sobic002G329000 Sobic003G429000--Sobic002G245100 Sobic003G429000--Sobic009G159400 Sobic007G184600 Sobic007G184600 Sobic003G429000--Sobic007G184600 Sobic002G175100 Sobic002G175100 Sobic003G429000--Sobic002G175100 Sobic009G159400--Sobic001G038900 Sobic001G435000 Sobic001G435000 Sobic009G159400--Sobic001G435000 Sobic009G159400--Sobic004G321300 Sobic003G345100 Sobic003G345100 Sobic009G159400--Sobic003G345100 Sobic004G208700 Sobic004G208700 Sobic009G159400--Sobic004G208700 Sobic001G140900 Sobic001G140900 Sobic009G159400--Sobic001G140900 Sobic008G050600 Sobic008G050600 Sobic009G159400--Sobic008G050600 Sobic009G159400--Sobic010G259600 Sobic009G159400--Sobic004G237800 Sobic005G018700--Sobic002G245100 Sobic002G017800 Sobic002G017800 Sobic005G018700--Sobic002G017800 Sobic006G103000 Sobic006G103000 Sobic005G018700--Sobic006G103000 Sobic010G185000 Sobic010G185000 Sobic005G018700--Sobic010G185000 Sobic005G018700--Sobic003G429000 Sobic005G018700--Sobic003G037800 Sobic005G018700--Sobic004G340900 Sobic005G018700--Sobic001G050100 Sobic003G192100 Sobic003G192100 Sobic005G018700--Sobic003G192100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.