Gene annotation
Transcriptome id Sobic.001G516600.1
Synonym Sb01g048200, OPCL1
Functional annotation AMP-binding domain containing protein, expressed
UniProt C5WZV3
Pfam PF13193 PF00501
Panther DB PTHR24096 PTHR24096:SF186
NCBI CDD -
KEGG Orthology K10526; OPC-8:0 CoA ligase 1
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT1G20510 : OPC-8:0 CoA ligase1
RAP-DB (Rice) LOC_Os03g04000.1 : AMP-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a000454
Brachypodium KQK23804
Barley HORVU4Hr1G081940.1 , HORVU4Hr1G081940.2 , HORVU4Hr1G081940.3
Wheat TraesCS5A02G498800 , TraesCS4B02G326800 , TraesCS4D02G323500 , TraesCS4D02G323500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G173300 alpha-1,4-glucan-protein synthase, putative, expressed K13379: RGP, reversibly glycosylated polypeptide / UDP-arabinopyranose mutase
2 Sobic.007G151100 12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
3 Sobic.003G037800 transferase family protein, putative, expressed -
4 Sobic.003G296700 protein kinase domain containing protein, expressed -
5 Sobic.010G268400 eukaryotic aspartyl protease domain containing protein, expressed -
6 Sobic.001G532200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsRhmbd7 - Putative Rhomboid homologue, expressed -
7 Sobic.006G131400 expressed protein -
8 Sobic.008G177800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
9 Sobic.002G245100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@pirin, putative, expressed K06911: quercetin 2,3-dioxygenase
10 Sobic.001G513700 down-regulated TF in developmental senescence(PubMedID : 27586543)@BHLH transcription factor, putative, expressed -
11 Sobic.001G206400 fiber protein Fb34, putative, expressed -
12 Sobic.002G294700 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -
13 Sobic.002G374100 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
14 Sobic.004G036600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@activator of 90 kDa heat shock protein ATPase homolog, putative, expressed -
15 Sobic.009G033700 protein kinase, putative, expressed K13436: pto-interacting protein 1
16 Sobic.002G343500 CAMK_CAMK_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
17 Sobic.001G107400 helix-loop-helix DNA-binding domain containing protein, expressed -
18 Sobic.009G183300 glycerol-3-phosphate dehydrogenase, putative, expressed K00006: glycerol-3-phosphate dehydrogenase (NAD+)
19 Sobic.002G202600 joka8, putative, expressed -
20 Sobic.002G140300 plastocyanin-like domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G516600 Sobic001G516600 Sobic001G173300 Sobic001G173300 Sobic001G516600--Sobic001G173300 Sobic007G151100 Sobic007G151100 Sobic001G516600--Sobic007G151100 Sobic003G037800 Sobic003G037800 Sobic001G516600--Sobic003G037800 Sobic003G296700 Sobic003G296700 Sobic001G516600--Sobic003G296700 Sobic010G268400 Sobic010G268400 Sobic001G516600--Sobic010G268400 Sobic001G532200 Sobic001G532200 Sobic001G516600--Sobic001G532200 Sobic006G131400 Sobic006G131400 Sobic001G516600--Sobic006G131400 Sobic008G177800 Sobic008G177800 Sobic001G516600--Sobic008G177800 Sobic002G245100 Sobic002G245100 Sobic001G516600--Sobic002G245100 Sobic001G173300--Sobic001G516600 Sobic004G257300 Sobic004G257300 Sobic001G173300--Sobic004G257300 Sobic004G036600 Sobic004G036600 Sobic001G173300--Sobic004G036600 Sobic009G208800 Sobic009G208800 Sobic001G173300--Sobic009G208800 Sobic001G084100 Sobic001G084100 Sobic001G173300--Sobic001G084100 Sobic010G065900 Sobic010G065900 Sobic001G173300--Sobic010G065900 Sobic001G173300--Sobic007G151100 Sobic009G027900 Sobic009G027900 Sobic001G173300--Sobic009G027900 Sobic005G168100 Sobic005G168100 Sobic001G173300--Sobic005G168100 Sobic007G151100--Sobic001G516600 Sobic003G158500 Sobic003G158500 Sobic007G151100--Sobic003G158500 Sobic002G356101 Sobic002G356101 Sobic007G151100--Sobic002G356101 Sobic001G538866 Sobic001G538866 Sobic007G151100--Sobic001G538866 Sobic005G028700 Sobic005G028700 Sobic007G151100--Sobic005G028700 Sobic002G140300 Sobic002G140300 Sobic007G151100--Sobic002G140300 Sobic007G151100--Sobic002G245100 Sobic001G513700 Sobic001G513700 Sobic007G151100--Sobic001G513700 Sobic002G036100 Sobic002G036100 Sobic007G151100--Sobic002G036100 Sobic003G429000 Sobic003G429000 Sobic003G037800--Sobic003G429000 Sobic003G037800--Sobic002G245100 Sobic001G389000 Sobic001G389000 Sobic003G037800--Sobic001G389000 Sobic009G033700 Sobic009G033700 Sobic003G037800--Sobic009G033700 Sobic009G159400 Sobic009G159400 Sobic003G037800--Sobic009G159400 Sobic005G018700 Sobic005G018700 Sobic003G037800--Sobic005G018700 Sobic006G183400 Sobic006G183400 Sobic003G037800--Sobic006G183400 Sobic004G321300 Sobic004G321300 Sobic003G037800--Sobic004G321300 Sobic004G340900 Sobic004G340900 Sobic003G037800--Sobic004G340900 Sobic003G296700--Sobic001G516600 Sobic003G296700--Sobic009G208800 Sobic009G220200 Sobic009G220200 Sobic003G296700--Sobic009G220200 Sobic001G341600 Sobic001G341600 Sobic003G296700--Sobic001G341600 Sobic009G217600 Sobic009G217600 Sobic003G296700--Sobic009G217600 Sobic010G076600 Sobic010G076600 Sobic003G296700--Sobic010G076600 Sobic006G095600 Sobic006G095600 Sobic003G296700--Sobic006G095600 Sobic002G374100 Sobic002G374100 Sobic003G296700--Sobic002G374100 Sobic002G294700 Sobic002G294700 Sobic003G296700--Sobic002G294700 Sobic002G329000 Sobic002G329000 Sobic010G268400--Sobic002G329000 Sobic010G268400--Sobic001G516600 Sobic003G192100 Sobic003G192100 Sobic010G268400--Sobic003G192100 Sobic005G093000 Sobic005G093000 Sobic010G268400--Sobic005G093000 Sobic001G107400 Sobic001G107400 Sobic010G268400--Sobic001G107400 Sobic010G268400--Sobic003G037800 Sobic010G268400--Sobic002G245100 Sobic010G268400--Sobic003G429000 Sobic010G195500 Sobic010G195500 Sobic010G268400--Sobic010G195500 Sobic001G532200--Sobic001G516600 Sobic001G532200--Sobic001G084100 Sobic004G212300 Sobic004G212300 Sobic001G532200--Sobic004G212300 Sobic001G532200--Sobic001G513700 Sobic009G248500 Sobic009G248500 Sobic001G532200--Sobic009G248500 Sobic001G532200--Sobic007G151100 Sobic010G052200 Sobic010G052200 Sobic001G532200--Sobic010G052200 Sobic009G073300 Sobic009G073300 Sobic001G532200--Sobic009G073300 Sobic001G532200--Sobic009G027900 Sobic006G131400--Sobic001G516600 Sobic003G094200 Sobic003G094200 Sobic006G131400--Sobic003G094200 Sobic002G343500 Sobic002G343500 Sobic006G131400--Sobic002G343500 Sobic003G285800 Sobic003G285800 Sobic006G131400--Sobic003G285800 Sobic006G131400--Sobic009G033700 Sobic004G318100 Sobic004G318100 Sobic006G131400--Sobic004G318100 Sobic009G129000 Sobic009G129000 Sobic006G131400--Sobic009G129000 Sobic006G131400--Sobic001G107400 Sobic006G131400--Sobic004G036600 Sobic008G177800--Sobic002G294700 Sobic006G231100 Sobic006G231100 Sobic008G177800--Sobic006G231100 Sobic010G234600 Sobic010G234600 Sobic008G177800--Sobic010G234600 Sobic004G286600 Sobic004G286600 Sobic008G177800--Sobic004G286600 Sobic002G415600 Sobic002G415600 Sobic008G177800--Sobic002G415600 Sobic010G217800 Sobic010G217800 Sobic008G177800--Sobic010G217800 Sobic009G255500 Sobic009G255500 Sobic008G177800--Sobic009G255500 Sobic006G230900 Sobic006G230900 Sobic008G177800--Sobic006G230900 Sobic001G077700 Sobic001G077700 Sobic008G177800--Sobic001G077700 Sobic002G245100--Sobic005G018700 Sobic002G245100--Sobic003G037800 Sobic004G237800 Sobic004G237800 Sobic002G245100--Sobic004G237800 Sobic002G202600 Sobic002G202600 Sobic002G245100--Sobic002G202600 Sobic005G196800 Sobic005G196800 Sobic002G245100--Sobic005G196800 Sobic002G245100--Sobic004G340900 Sobic002G245100--Sobic004G321300 Sobic002G245100--Sobic003G158500 Sobic002G245100--Sobic001G107400
Octagon: transcription factors


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