Gene annotation
Transcriptome id Sobic.001G173300.1
Synonym ATRGP2, RGP2, Sb01g015090
Functional annotation alpha-1,4-glucan-protein synthase, putative, expressed
UniProt C5WT90
Pfam PF03214
Panther DB PTHR31682 PTHR31682:SF3
NCBI CDD -
KEGG Orthology K13379; RGP, reversibly glycosylated polypeptide / UDP-arabinopyranose mutase
Gene Ontology GO:0016866; intramolecular transferase activity


Orthologs (automatic annotation)
TAIR AT5G15650 : reversibly glycosylated polypeptide 2
RAP-DB (Rice) LOC_Os03g40270.1 : alpha-1,4-glucan-protein synthase, putative, expressed
MaizeGDB (Corn) Zm00025a017325 , Zm00025a048700 , Zm00025a007204
Brachypodium KQK09873 , KQK14266 , KQK15337
Barley HORVU2Hr1G033100.3 , HORVU2Hr1G033100.2 , HORVU2Hr1G033100.1 , HORVU3Hr1G073780.1 , HORVU4Hr1G038960.2 , HORVU4Hr1G038960.3 , HORVU4Hr1G038960.1 , HORVU4Hr1G038960.4
Wheat TraesCS2D02G553900 , TraesCS3B02G333100 , TraesCS2A02G174400 , TraesCS3D02G298600 , TraesCS4B02G144900 , TraesCS4D02G151900 , TraesCS4D02G151900 , TraesCS2B02G200900 , TraesCS2D02G181700 , TraesCS1A02G271600 , TraesCS3A02G303200 , TraesCS4A02G166900
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G173300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G516600 AMP-binding domain containing protein, expressed K10526: OPC-8:0 CoA ligase 1
2 Sobic.004G257300 GPI-anchored protein, putative, expressed -
3 Sobic.004G036600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@activator of 90 kDa heat shock protein ATPase homolog, putative, expressed -
4 Sobic.009G208800 hydrolase, acting on carbon-nitrogen, putative, expressed -
5 Sobic.001G084100 UDP-glucose 6-dehydrogenase 5(PubMedID : 26186930)@UDP-glucose 6-dehydrogenase, putative, expressed K00012: UGDH, UDPglucose 6-dehydrogenase
6 Sobic.010G065900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@formin-like protein 13, putative, expressed -
7 Sobic.007G151100 12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
8 Sobic.009G027900 TKL_IRAK_CR4L.4 - The CR4L subfamily has homology with Crinkly4, expressed -
9 Sobic.005G168100 ADP-ribosylation factor, putative, expressed K07950: ADP-ribosylation factor-like protein 5B
10 Sobic.004G318100 adenylate kinase, putative, expressed K13800: CMPK1, UMP-CMP kinase
11 Sobic.001G532200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsRhmbd7 - Putative Rhomboid homologue, expressed -
12 Sobic.003G296700 protein kinase domain containing protein, expressed -
13 Sobic.008G177800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
14 Sobic.009G220200 exostosin family domain containing protein, expressed -
15 Sobic.001G018500 expressed protein K17784: MINOS1, mitochondrial inner membrane organizing system protein 1
16 Sobic.006G131400 expressed protein -
17 Sobic.001G513700 down-regulated TF in developmental senescence(PubMedID : 27586543)@BHLH transcription factor, putative, expressed -
18 Sobic.002G294700 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -
19 Sobic.002G343500 CAMK_CAMK_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
20 Sobic.003G037800 transferase family protein, putative, expressed -


Gene co-expression network
sample Sobic001G173300 Sobic001G173300 Sobic001G516600 Sobic001G516600 Sobic001G173300--Sobic001G516600 Sobic004G257300 Sobic004G257300 Sobic001G173300--Sobic004G257300 Sobic004G036600 Sobic004G036600 Sobic001G173300--Sobic004G036600 Sobic009G208800 Sobic009G208800 Sobic001G173300--Sobic009G208800 Sobic001G084100 Sobic001G084100 Sobic001G173300--Sobic001G084100 Sobic010G065900 Sobic010G065900 Sobic001G173300--Sobic010G065900 Sobic007G151100 Sobic007G151100 Sobic001G173300--Sobic007G151100 Sobic009G027900 Sobic009G027900 Sobic001G173300--Sobic009G027900 Sobic005G168100 Sobic005G168100 Sobic001G173300--Sobic005G168100 Sobic001G516600--Sobic001G173300 Sobic001G516600--Sobic007G151100 Sobic003G037800 Sobic003G037800 Sobic001G516600--Sobic003G037800 Sobic003G296700 Sobic003G296700 Sobic001G516600--Sobic003G296700 Sobic010G268400 Sobic010G268400 Sobic001G516600--Sobic010G268400 Sobic001G532200 Sobic001G532200 Sobic001G516600--Sobic001G532200 Sobic006G131400 Sobic006G131400 Sobic001G516600--Sobic006G131400 Sobic008G177800 Sobic008G177800 Sobic001G516600--Sobic008G177800 Sobic002G245100 Sobic002G245100 Sobic001G516600--Sobic002G245100 Sobic004G257300--Sobic001G173300 Sobic010G030900 Sobic010G030900 Sobic004G257300--Sobic010G030900 Sobic004G257300--Sobic009G208800 Sobic002G294700 Sobic002G294700 Sobic004G257300--Sobic002G294700 Sobic004G257300--Sobic008G177800 Sobic004G257300--Sobic004G036600 Sobic006G205600 Sobic006G205600 Sobic004G257300--Sobic006G205600 Sobic004G286600 Sobic004G286600 Sobic004G257300--Sobic004G286600 Sobic001G489600 Sobic001G489600 Sobic004G257300--Sobic001G489600 Sobic004G036600--Sobic002G294700 Sobic004G036600--Sobic008G177800 Sobic006G231100 Sobic006G231100 Sobic004G036600--Sobic006G231100 Sobic004G036600--Sobic001G173300 Sobic010G234600 Sobic010G234600 Sobic004G036600--Sobic010G234600 Sobic004G036600--Sobic001G516600 Sobic002G374100 Sobic002G374100 Sobic004G036600--Sobic002G374100 Sobic009G141800 Sobic009G141800 Sobic004G036600--Sobic009G141800 Sobic009G217000 Sobic009G217000 Sobic004G036600--Sobic009G217000 Sobic009G208800--Sobic001G173300 Sobic009G208800--Sobic004G257300 Sobic009G220200 Sobic009G220200 Sobic009G208800--Sobic009G220200 Sobic009G208800--Sobic003G296700 Sobic009G208800--Sobic001G516600 Sobic007G057100 Sobic007G057100 Sobic009G208800--Sobic007G057100 Sobic009G208800--Sobic002G294700 Sobic005G231700 Sobic005G231700 Sobic009G208800--Sobic005G231700 Sobic009G208800--Sobic008G177800 Sobic001G084100--Sobic001G532200 Sobic001G084100--Sobic001G173300 Sobic006G156000 Sobic006G156000 Sobic001G084100--Sobic006G156000 Sobic010G052200 Sobic010G052200 Sobic001G084100--Sobic010G052200 Sobic001G084100--Sobic005G168100 Sobic004G212300 Sobic004G212300 Sobic001G084100--Sobic004G212300 Sobic003G119500 Sobic003G119500 Sobic001G084100--Sobic003G119500 Sobic003G219800 Sobic003G219800 Sobic001G084100--Sobic003G219800 Sobic001G418100 Sobic001G418100 Sobic001G084100--Sobic001G418100 Sobic010G028200 Sobic010G028200 Sobic010G065900--Sobic010G028200 Sobic010G065900--Sobic001G173300 Sobic002G393400 Sobic002G393400 Sobic010G065900--Sobic002G393400 Sobic010G065900--Sobic009G141800 Sobic010G065900--Sobic001G516600 Sobic003G209000 Sobic003G209000 Sobic010G065900--Sobic003G209000 Sobic004G318100 Sobic004G318100 Sobic010G065900--Sobic004G318100 Sobic003G160700 Sobic003G160700 Sobic010G065900--Sobic003G160700 Sobic001G322200 Sobic001G322200 Sobic010G065900--Sobic001G322200 Sobic007G151100--Sobic001G516600 Sobic003G158500 Sobic003G158500 Sobic007G151100--Sobic003G158500 Sobic002G356101 Sobic002G356101 Sobic007G151100--Sobic002G356101 Sobic001G538866 Sobic001G538866 Sobic007G151100--Sobic001G538866 Sobic005G028700 Sobic005G028700 Sobic007G151100--Sobic005G028700 Sobic002G140300 Sobic002G140300 Sobic007G151100--Sobic002G140300 Sobic007G151100--Sobic002G245100 Sobic001G513700 Sobic001G513700 Sobic007G151100--Sobic001G513700 Sobic002G036100 Sobic002G036100 Sobic007G151100--Sobic002G036100 Sobic009G248500 Sobic009G248500 Sobic009G027900--Sobic009G248500 Sobic009G027900--Sobic001G322200 Sobic006G066200 Sobic006G066200 Sobic009G027900--Sobic006G066200 Sobic008G042900 Sobic008G042900 Sobic009G027900--Sobic008G042900 Sobic009G027900--Sobic002G140300 Sobic009G027900--Sobic001G532200 Sobic001G464900 Sobic001G464900 Sobic009G027900--Sobic001G464900 Sobic006G165100 Sobic006G165100 Sobic009G027900--Sobic006G165100 Sobic009G027900--Sobic001G516600 Sobic009G232900 Sobic009G232900 Sobic005G168100--Sobic009G232900 Sobic001G432000 Sobic001G432000 Sobic005G168100--Sobic001G432000 Sobic005G168100--Sobic006G156000 Sobic003G155400 Sobic003G155400 Sobic005G168100--Sobic003G155400 Sobic005G168100--Sobic003G209000 Sobic002G296200 Sobic002G296200 Sobic005G168100--Sobic002G296200 Sobic002G418400 Sobic002G418400 Sobic005G168100--Sobic002G418400 Sobic003G215700 Sobic003G215700 Sobic005G168100--Sobic003G215700 Sobic003G150000 Sobic003G150000 Sobic005G168100--Sobic003G150000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.