Gene annotation
Transcriptome id Sobic.009G027900.1
Synonym Sb09g002330, ATCRR3, CCR3
Functional annotation TKL_IRAK_CR4L.4 - The CR4L subfamily has homology with Crinkly4, expressed
UniProt A0A1Z5R0Q7
Pfam PF07714
Panther DB PTHR27003 PTHR27003:SF102
NCBI CDD KOG1187; Serine/threonine protein kinase
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT3G55950 : CRINKLY4 related 3
RAP-DB (Rice) LOC_Os05g03620.1 : TKL_IRAK_CR4L.4 - The CR4L subfamily has homology with Crinkly4, expressed
MaizeGDB (Corn) Zm00025a040722 , Zm00025a040723 , Zm00025a029688 , Zm00025a019136 , Zm00025a049892 , Zm00025a012726 , Zm00025a038178 , Zm00025a011296
Brachypodium KQK07880 , KQJ88913 , KQJ82756 , KQK23335 , PNT69199 , KQK00688
Barley HORVU3Hr1G024950.11 , HORVU3Hr1G024950.10 , HORVU0Hr1G039910.2 , HORVU2Hr1G095970.9 , HORVU2Hr1G095970.1 , HORVU2Hr1G095970.4 , HORVU2Hr1G095970.12 , HORVU2Hr1G076720.1 , HORVU4Hr1G016080.1 , HORVU3Hr1G086590.1 , HORVU3Hr1G086590.3 , HORVU3Hr1G086590.2 , HORVU3Hr1G024950.5 , HORVU3Hr1G024950.4 , HORVU3Hr1G024950.7 , HORVU3Hr1G024950.6 , HORVU3Hr1G024950.1 , HORVU3Hr1G024950.3 , HORVU3Hr1G024950.2 , HORVU3Hr1G024950.9 , HORVU3Hr1G024950.8 , HORVU4Hr1G076520.3 , HORVU4Hr1G076520.5
Wheat TraesCS2B02G422500 , TraesCS2B02G422500 , TraesCS5D02G007100 , TraesCS6B02G439700 , TraesCS5B02G344100 , TraesCS5D02G007100 , TraesCS2D02G401500 , TraesCS2D02G401500 , TraesCS7D02G318600 , TraesCS7D02G318600 , TraesCS5D02G007100 , TraesCS2D02G401500
Populus -


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cDNA sequences
Sobic.009G027900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G248500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@C4-dicarboxylate transporter/malic acid transport protein, expressed -
2 Sobic.001G322200 hydrolase, alpha/beta fold family protein, putative, expressed -
3 Sobic.006G066200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@prephenate dehydratase domain containing protein, expressed K05359: ADT, arogenate/prephenate dehydratase
4 Sobic.008G042900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@harpin-induced protein 1 domain containing protein, expressed -
5 Sobic.002G140300 plastocyanin-like domain containing protein, putative, expressed -
6 Sobic.001G532200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsRhmbd7 - Putative Rhomboid homologue, expressed -
7 Sobic.001G464900 "Ca ATPase, IIB type"(PubMedID : 22196357)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
8 Sobic.006G165100 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -
9 Sobic.001G516600 AMP-binding domain containing protein, expressed K10526: OPC-8:0 CoA ligase 1
10 Sobic.001G173300 alpha-1,4-glucan-protein synthase, putative, expressed K13379: RGP, reversibly glycosylated polypeptide / UDP-arabinopyranose mutase
11 Sobic.004G341800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@thioredoxin family protein, putative, expressed -
12 Sobic.004G222500 gibberellin 2-beta-dioxygenase 7, putative, expressed K04125: gibberellin 2beta-dioxygenase
13 Sobic.001G437000 ACT domain containing protein, expressed -
14 Sobic.003G037800 transferase family protein, putative, expressed -
15 Sobic.010G065900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@formin-like protein 13, putative, expressed -
16 Sobic.009G217600 STE_MEKK_ste11_MAP3K.19 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
17 Sobic.006G183400 OsRhmbd11 - Putative Rhomboid homologue, expressed -
18 Sobic.001G341600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tyrosine protein kinase domain containing protein, putative, expressed -
19 Sobic.006G179500 protein kinase APK1B, chloroplast precursor, putative, expressed -
20 Sobic.001G441100 immediate-early fungal elicitor protein CMPG1, putative, expressed -


Gene co-expression network
sample Sobic009G027900 Sobic009G027900 Sobic009G248500 Sobic009G248500 Sobic009G027900--Sobic009G248500 Sobic001G322200 Sobic001G322200 Sobic009G027900--Sobic001G322200 Sobic006G066200 Sobic006G066200 Sobic009G027900--Sobic006G066200 Sobic008G042900 Sobic008G042900 Sobic009G027900--Sobic008G042900 Sobic002G140300 Sobic002G140300 Sobic009G027900--Sobic002G140300 Sobic001G532200 Sobic001G532200 Sobic009G027900--Sobic001G532200 Sobic001G464900 Sobic001G464900 Sobic009G027900--Sobic001G464900 Sobic006G165100 Sobic006G165100 Sobic009G027900--Sobic006G165100 Sobic001G516600 Sobic001G516600 Sobic009G027900--Sobic001G516600 Sobic009G248500--Sobic001G322200 Sobic001G267600 Sobic001G267600 Sobic009G248500--Sobic001G267600 Sobic003G037800 Sobic003G037800 Sobic009G248500--Sobic003G037800 Sobic009G248500--Sobic009G027900 Sobic002G356101 Sobic002G356101 Sobic009G248500--Sobic002G356101 Sobic001G247300 Sobic001G247300 Sobic009G248500--Sobic001G247300 Sobic003G228900 Sobic003G228900 Sobic009G248500--Sobic003G228900 Sobic009G248500--Sobic006G066200 Sobic003G093000 Sobic003G093000 Sobic009G248500--Sobic003G093000 Sobic001G322200--Sobic009G248500 Sobic004G341800 Sobic004G341800 Sobic001G322200--Sobic004G341800 Sobic001G322200--Sobic009G027900 Sobic001G322200--Sobic001G267600 Sobic001G322200--Sobic003G228900 Sobic002G189100 Sobic002G189100 Sobic001G322200--Sobic002G189100 Sobic004G041900 Sobic004G041900 Sobic001G322200--Sobic004G041900 Sobic003G049700 Sobic003G049700 Sobic001G322200--Sobic003G049700 Sobic004G065500 Sobic004G065500 Sobic001G322200--Sobic004G065500 Sobic003G430400 Sobic003G430400 Sobic006G066200--Sobic003G430400 Sobic006G066200--Sobic002G140300 Sobic004G222500 Sobic004G222500 Sobic006G066200--Sobic004G222500 Sobic009G247900 Sobic009G247900 Sobic006G066200--Sobic009G247900 Sobic006G066200--Sobic004G341800 Sobic001G040200 Sobic001G040200 Sobic006G066200--Sobic001G040200 Sobic003G092900 Sobic003G092900 Sobic006G066200--Sobic003G092900 Sobic002G131800 Sobic002G131800 Sobic006G066200--Sobic002G131800 Sobic006G179500 Sobic006G179500 Sobic006G066200--Sobic006G179500 Sobic001G341600 Sobic001G341600 Sobic008G042900--Sobic001G341600 Sobic009G217600 Sobic009G217600 Sobic008G042900--Sobic009G217600 Sobic001G441100 Sobic001G441100 Sobic008G042900--Sobic001G441100 Sobic008G042900--Sobic002G140300 Sobic008G042900--Sobic002G131800 Sobic004G280900 Sobic004G280900 Sobic008G042900--Sobic004G280900 Sobic008G042900--Sobic009G027900 Sobic008G042900--Sobic006G066200 Sobic001G077400 Sobic001G077400 Sobic008G042900--Sobic001G077400 Sobic002G140300--Sobic006G179500 Sobic002G140300--Sobic001G040200 Sobic002G140300--Sobic006G165100 Sobic002G140300--Sobic004G222500 Sobic001G538866 Sobic001G538866 Sobic002G140300--Sobic001G538866 Sobic009G036100 Sobic009G036100 Sobic002G140300--Sobic009G036100 Sobic006G183400 Sobic006G183400 Sobic002G140300--Sobic006G183400 Sobic003G324400 Sobic003G324400 Sobic002G140300--Sobic003G324400 Sobic002G140300--Sobic009G247900 Sobic001G532200--Sobic001G516600 Sobic001G084100 Sobic001G084100 Sobic001G532200--Sobic001G084100 Sobic004G212300 Sobic004G212300 Sobic001G532200--Sobic004G212300 Sobic001G513700 Sobic001G513700 Sobic001G532200--Sobic001G513700 Sobic001G532200--Sobic009G248500 Sobic007G151100 Sobic007G151100 Sobic001G532200--Sobic007G151100 Sobic010G052200 Sobic010G052200 Sobic001G532200--Sobic010G052200 Sobic009G073300 Sobic009G073300 Sobic001G532200--Sobic009G073300 Sobic001G532200--Sobic009G027900 Sobic001G464900--Sobic009G248500 Sobic001G464900--Sobic001G322200 Sobic001G464900--Sobic009G027900 Sobic006G159600 Sobic006G159600 Sobic001G464900--Sobic006G159600 Sobic005G228900 Sobic005G228900 Sobic001G464900--Sobic005G228900 Sobic001G173300 Sobic001G173300 Sobic001G464900--Sobic001G173300 Sobic007G198100 Sobic007G198100 Sobic001G464900--Sobic007G198100 Sobic001G464900--Sobic002G356101 Sobic010G065900 Sobic010G065900 Sobic001G464900--Sobic010G065900 Sobic006G165100--Sobic002G140300 Sobic006G165100--Sobic003G324400 Sobic006G165100--Sobic001G077400 Sobic001G052300 Sobic001G052300 Sobic006G165100--Sobic001G052300 Sobic002G036100 Sobic002G036100 Sobic006G165100--Sobic002G036100 Sobic006G165100--Sobic009G036100 Sobic009G255500 Sobic009G255500 Sobic006G165100--Sobic009G255500 Sobic006G165100--Sobic004G280900 Sobic009G200700 Sobic009G200700 Sobic006G165100--Sobic009G200700 Sobic001G516600--Sobic001G173300 Sobic001G516600--Sobic007G151100 Sobic001G516600--Sobic003G037800 Sobic003G296700 Sobic003G296700 Sobic001G516600--Sobic003G296700 Sobic010G268400 Sobic010G268400 Sobic001G516600--Sobic010G268400 Sobic001G516600--Sobic001G532200 Sobic006G131400 Sobic006G131400 Sobic001G516600--Sobic006G131400 Sobic008G177800 Sobic008G177800 Sobic001G516600--Sobic008G177800 Sobic002G245100 Sobic002G245100 Sobic001G516600--Sobic002G245100
Octagon: transcription factors


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