Gene annotation
Transcriptome id Sobic.008G042900.1
Synonym Sb08g003690, NHL3
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
harpin-induced protein 1 domain containing protein, expressed
UniProt C5YS67
Pfam PF03168
Panther DB PTHR31415 PTHR31415:SF16
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G06320 : NDR1/HIN1-like 3
RAP-DB (Rice) LOC_Os12g06220.1 : harpin-induced protein 1 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a025795 , Zm00025a029036
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.008G042900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G341600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tyrosine protein kinase domain containing protein, putative, expressed -
2 Sobic.009G217600 STE_MEKK_ste11_MAP3K.19 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
3 Sobic.001G441100 immediate-early fungal elicitor protein CMPG1, putative, expressed -
4 Sobic.002G140300 plastocyanin-like domain containing protein, putative, expressed -
5 Sobic.002G131800 copine, putative, expressed K16280: E3 ubiquitin-protein ligase RGLG
6 Sobic.004G280900 zinc finger, C3HC4 type domain containing protein, expressed -
7 Sobic.009G027900 TKL_IRAK_CR4L.4 - The CR4L subfamily has homology with Crinkly4, expressed -
8 Sobic.006G066200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@prephenate dehydratase domain containing protein, expressed K05359: ADT, arogenate/prephenate dehydratase
9 Sobic.001G077400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K01723: hydroperoxide dehydratase
10 Sobic.002G278500 nodulin, putative, expressed -
11 Sobic.006G179500 protein kinase APK1B, chloroplast precursor, putative, expressed -
12 Sobic.004G222500 gibberellin 2-beta-dioxygenase 7, putative, expressed K04125: gibberellin 2beta-dioxygenase
13 Sobic.003G353800 avr9/Cf-9 rapidly elicited protein, putative, expressed -
14 Sobic.010G234000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EF hand family protein, putative, expressed -
15 Sobic.006G183400 OsRhmbd11 - Putative Rhomboid homologue, expressed -
16 Sobic.006G165100 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -
17 Sobic.001G095300 prenylated rab acceptor, putative, expressed -
18 Sobic.010G064000 expressed protein -
19 Sobic.001G035000 ZOS3-22 - C2H2 zinc finger protein, expressed -
20 Sobic.007G126300 spotted leaf 11, putative, expressed -


Gene co-expression network
sample Sobic008G042900 Sobic008G042900 Sobic001G341600 Sobic001G341600 Sobic008G042900--Sobic001G341600 Sobic009G217600 Sobic009G217600 Sobic008G042900--Sobic009G217600 Sobic001G441100 Sobic001G441100 Sobic008G042900--Sobic001G441100 Sobic002G140300 Sobic002G140300 Sobic008G042900--Sobic002G140300 Sobic002G131800 Sobic002G131800 Sobic008G042900--Sobic002G131800 Sobic004G280900 Sobic004G280900 Sobic008G042900--Sobic004G280900 Sobic009G027900 Sobic009G027900 Sobic008G042900--Sobic009G027900 Sobic006G066200 Sobic006G066200 Sobic008G042900--Sobic006G066200 Sobic001G077400 Sobic001G077400 Sobic008G042900--Sobic001G077400 Sobic001G341600--Sobic009G217600 Sobic001G341600--Sobic001G441100 Sobic001G035000 Sobic001G035000 Sobic001G341600--Sobic001G035000 Sobic001G341600--Sobic001G077400 Sobic001G341600--Sobic004G280900 Sobic001G341600--Sobic002G140300 Sobic003G353800 Sobic003G353800 Sobic001G341600--Sobic003G353800 Sobic002G278500 Sobic002G278500 Sobic001G341600--Sobic002G278500 Sobic001G538866 Sobic001G538866 Sobic001G341600--Sobic001G538866 Sobic009G217600--Sobic001G441100 Sobic009G217600--Sobic001G341600 Sobic009G217600--Sobic001G077400 Sobic009G217600--Sobic001G035000 Sobic009G217600--Sobic004G280900 Sobic001G209800 Sobic001G209800 Sobic009G217600--Sobic001G209800 Sobic005G037000 Sobic005G037000 Sobic009G217600--Sobic005G037000 Sobic009G217600--Sobic003G353800 Sobic009G217600--Sobic002G278500 Sobic001G441100--Sobic001G035000 Sobic001G441100--Sobic009G217600 Sobic001G441100--Sobic001G077400 Sobic001G441100--Sobic001G341600 Sobic001G441100--Sobic005G037000 Sobic001G441100--Sobic004G280900 Sobic001G441100--Sobic002G278500 Sobic001G441100--Sobic001G209800 Sobic001G441100--Sobic002G140300 Sobic006G179500 Sobic006G179500 Sobic002G140300--Sobic006G179500 Sobic001G040200 Sobic001G040200 Sobic002G140300--Sobic001G040200 Sobic006G165100 Sobic006G165100 Sobic002G140300--Sobic006G165100 Sobic004G222500 Sobic004G222500 Sobic002G140300--Sobic004G222500 Sobic002G140300--Sobic001G538866 Sobic009G036100 Sobic009G036100 Sobic002G140300--Sobic009G036100 Sobic006G183400 Sobic006G183400 Sobic002G140300--Sobic006G183400 Sobic003G324400 Sobic003G324400 Sobic002G140300--Sobic003G324400 Sobic009G247900 Sobic009G247900 Sobic002G140300--Sobic009G247900 Sobic002G131800--Sobic001G441100 Sobic002G131800--Sobic006G066200 Sobic002G131800--Sobic002G140300 Sobic002G131800--Sobic006G179500 Sobic002G131800--Sobic009G217600 Sobic002G131800--Sobic001G341600 Sobic002G131800--Sobic001G077400 Sobic002G131800--Sobic001G035000 Sobic002G131800--Sobic006G165100 Sobic004G280900--Sobic001G077400 Sobic004G280900--Sobic005G037000 Sobic004G280900--Sobic009G217600 Sobic004G280900--Sobic001G209800 Sobic004G280900--Sobic001G441100 Sobic002G036100 Sobic002G036100 Sobic004G280900--Sobic002G036100 Sobic004G280900--Sobic002G140300 Sobic004G280900--Sobic001G538866 Sobic004G280900--Sobic001G341600 Sobic009G248500 Sobic009G248500 Sobic009G027900--Sobic009G248500 Sobic001G322200 Sobic001G322200 Sobic009G027900--Sobic001G322200 Sobic009G027900--Sobic006G066200 Sobic009G027900--Sobic008G042900 Sobic009G027900--Sobic002G140300 Sobic001G532200 Sobic001G532200 Sobic009G027900--Sobic001G532200 Sobic001G464900 Sobic001G464900 Sobic009G027900--Sobic001G464900 Sobic009G027900--Sobic006G165100 Sobic001G516600 Sobic001G516600 Sobic009G027900--Sobic001G516600 Sobic003G430400 Sobic003G430400 Sobic006G066200--Sobic003G430400 Sobic006G066200--Sobic002G140300 Sobic006G066200--Sobic004G222500 Sobic006G066200--Sobic009G247900 Sobic004G341800 Sobic004G341800 Sobic006G066200--Sobic004G341800 Sobic006G066200--Sobic001G040200 Sobic003G092900 Sobic003G092900 Sobic006G066200--Sobic003G092900 Sobic006G066200--Sobic002G131800 Sobic006G066200--Sobic006G179500 Sobic001G077400--Sobic004G280900 Sobic001G077400--Sobic005G037000 Sobic001G077400--Sobic001G209800 Sobic001G077400--Sobic001G441100 Sobic001G077400--Sobic009G217600 Sobic001G077400--Sobic001G035000 Sobic001G077400--Sobic002G036100 Sobic001G077400--Sobic006G165100 Sobic001G077400--Sobic001G341600
Octagon: transcription factors


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