Gene annotation
Transcriptome id Sobic.006G066200.1
Synonym Sb06g015310, ADT6
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
prephenate dehydratase domain containing protein, expressed
UniProt C5YFR9
Pfam PF00800
Panther DB PTHR21022 PTHR21022:SF5
NCBI CDD -
KEGG Orthology K05359; ADT, arogenate/prephenate dehydratase
Gene Ontology GO:0009094; L-phenylalanine biosynthetic process GO:0004664prephenate dehydratase activity


Orthologs (automatic annotation)
TAIR AT1G08250 : arogenate dehydratase 6
RAP-DB (Rice) LOC_Os04g33390.1 : prephenate dehydratase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a055985 , Zm00025a013501 , Zm00025a011557
Brachypodium KQJ82451 , KQJ82450 , KQJ91570
Barley HORVU2Hr1G072210.4 , HORVU2Hr1G072210.5 , HORVU2Hr1G072210.6 , HORVU2Hr1G072210.7 , HORVU5Hr1G092190.2 , HORVU2Hr1G072210.1 , HORVU2Hr1G072210.2 , HORVU5Hr1G092190.1 , HORVU2Hr1G072210.8 , HORVU2Hr1G072210.3 , HORVU2Hr1G072180.1 , HORVU2Hr1G072180.2
Wheat TraesCS2D02G289900
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G430400 OsCML31 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
2 Sobic.002G140300 plastocyanin-like domain containing protein, putative, expressed -
3 Sobic.004G222500 gibberellin 2-beta-dioxygenase 7, putative, expressed K04125: gibberellin 2beta-dioxygenase
4 Sobic.009G247900 similar to Putative late embryogenesis abundant protein(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@late embryogenesis abundant protein, putative, expressed -
5 Sobic.004G341800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@thioredoxin family protein, putative, expressed -
6 Sobic.001G040200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAC domain-containing protein 67, putative, expressed -
7 Sobic.003G092900 expressed protein -
8 Sobic.002G131800 copine, putative, expressed K16280: E3 ubiquitin-protein ligase RGLG
9 Sobic.006G179500 protein kinase APK1B, chloroplast precursor, putative, expressed -
10 Sobic.009G248500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@C4-dicarboxylate transporter/malic acid transport protein, expressed -
11 Sobic.009G027900 TKL_IRAK_CR4L.4 - The CR4L subfamily has homology with Crinkly4, expressed -
12 Sobic.002G356101 - -
13 Sobic.003G323700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsSub6 - Putative Subtilisin homologue, expressed -
14 Sobic.003G428700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.001G015100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pirin, putative, expressed K06911: quercetin 2,3-dioxygenase
16 Sobic.006G183400 OsRhmbd11 - Putative Rhomboid homologue, expressed -
17 Sobic.002G263400 expressed protein -
18 Sobic.009G036100 similar to Hydrophobic protein LTI6B(PubMedID : 29862293)@OsRCI2-6 - Hydrophobic protein LTI6B, expressed -
19 Sobic.001G095300 prenylated rab acceptor, putative, expressed -
20 Sobic.004G187900 riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed K14652: 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II


Gene co-expression network
sample Sobic006G066200 Sobic006G066200 Sobic003G430400 Sobic003G430400 Sobic006G066200--Sobic003G430400 Sobic002G140300 Sobic002G140300 Sobic006G066200--Sobic002G140300 Sobic004G222500 Sobic004G222500 Sobic006G066200--Sobic004G222500 Sobic009G247900 Sobic009G247900 Sobic006G066200--Sobic009G247900 Sobic004G341800 Sobic004G341800 Sobic006G066200--Sobic004G341800 Sobic001G040200 Sobic001G040200 Sobic006G066200--Sobic001G040200 Sobic003G092900 Sobic003G092900 Sobic006G066200--Sobic003G092900 Sobic002G131800 Sobic002G131800 Sobic006G066200--Sobic002G131800 Sobic006G179500 Sobic006G179500 Sobic006G066200--Sobic006G179500 Sobic002G263400 Sobic002G263400 Sobic003G430400--Sobic002G263400 Sobic002G140400 Sobic002G140400 Sobic003G430400--Sobic002G140400 Sobic003G430400--Sobic001G040200 Sobic003G430400--Sobic006G066200 Sobic003G430400--Sobic002G140300 Sobic007G074000 Sobic007G074000 Sobic003G430400--Sobic007G074000 Sobic003G430400--Sobic003G092900 Sobic002G356101 Sobic002G356101 Sobic003G430400--Sobic002G356101 Sobic003G430400--Sobic004G222500 Sobic002G140300--Sobic006G179500 Sobic002G140300--Sobic001G040200 Sobic006G165100 Sobic006G165100 Sobic002G140300--Sobic006G165100 Sobic002G140300--Sobic004G222500 Sobic001G538866 Sobic001G538866 Sobic002G140300--Sobic001G538866 Sobic009G036100 Sobic009G036100 Sobic002G140300--Sobic009G036100 Sobic006G183400 Sobic006G183400 Sobic002G140300--Sobic006G183400 Sobic003G324400 Sobic003G324400 Sobic002G140300--Sobic003G324400 Sobic002G140300--Sobic009G247900 Sobic004G222500--Sobic002G140300 Sobic003G093000 Sobic003G093000 Sobic004G222500--Sobic003G093000 Sobic004G222500--Sobic003G092900 Sobic003G428700 Sobic003G428700 Sobic004G222500--Sobic003G428700 Sobic004G222500--Sobic006G183400 Sobic004G222500--Sobic009G247900 Sobic001G035100 Sobic001G035100 Sobic004G222500--Sobic001G035100 Sobic002G220000 Sobic002G220000 Sobic004G222500--Sobic002G220000 Sobic004G222500--Sobic006G179500 Sobic009G247900--Sobic007G074000 Sobic003G202200 Sobic003G202200 Sobic009G247900--Sobic003G202200 Sobic001G383700 Sobic001G383700 Sobic009G247900--Sobic001G383700 Sobic003G228900 Sobic003G228900 Sobic009G247900--Sobic003G228900 Sobic009G247900--Sobic003G428700 Sobic010G209200 Sobic010G209200 Sobic009G247900--Sobic010G209200 Sobic009G247900--Sobic009G036100 Sobic009G036000 Sobic009G036000 Sobic009G247900--Sobic009G036000 Sobic009G247900--Sobic004G341800 Sobic004G341800--Sobic009G247900 Sobic001G471200 Sobic001G471200 Sobic004G341800--Sobic001G471200 Sobic001G322200 Sobic001G322200 Sobic004G341800--Sobic001G322200 Sobic004G341800--Sobic003G428700 Sobic004G341800--Sobic004G222500 Sobic009G122400 Sobic009G122400 Sobic004G341800--Sobic009G122400 Sobic004G341800--Sobic006G183400 Sobic004G341800--Sobic003G228900 Sobic002G189100 Sobic002G189100 Sobic004G341800--Sobic002G189100 Sobic001G040200--Sobic002G140300 Sobic002G359300 Sobic002G359300 Sobic001G040200--Sobic002G359300 Sobic001G040200--Sobic003G324400 Sobic001G040200--Sobic003G430400 Sobic001G040200--Sobic001G538866 Sobic001G040200--Sobic009G036100 Sobic003G158500 Sobic003G158500 Sobic001G040200--Sobic003G158500 Sobic001G040200--Sobic006G179500 Sobic002G245800 Sobic002G245800 Sobic001G040200--Sobic002G245800 Sobic003G092900--Sobic003G093000 Sobic003G092900--Sobic004G222500 Sobic003G092900--Sobic002G220000 Sobic001G247300 Sobic001G247300 Sobic003G092900--Sobic001G247300 Sobic003G092900--Sobic002G140300 Sobic003G092900--Sobic003G430400 Sobic003G092900--Sobic009G247900 Sobic001G267600 Sobic001G267600 Sobic003G092900--Sobic001G267600 Sobic003G092900--Sobic002G189100 Sobic001G441100 Sobic001G441100 Sobic002G131800--Sobic001G441100 Sobic002G131800--Sobic006G066200 Sobic002G131800--Sobic002G140300 Sobic002G131800--Sobic006G179500 Sobic009G217600 Sobic009G217600 Sobic002G131800--Sobic009G217600 Sobic001G341600 Sobic001G341600 Sobic002G131800--Sobic001G341600 Sobic001G077400 Sobic001G077400 Sobic002G131800--Sobic001G077400 Sobic001G035000 Sobic001G035000 Sobic002G131800--Sobic001G035000 Sobic002G131800--Sobic006G165100 Sobic006G179500--Sobic002G140300 Sobic006G179500--Sobic002G359300 Sobic006G179500--Sobic006G183400 Sobic006G179500--Sobic001G040200 Sobic006G179500--Sobic004G222500 Sobic003G300800 Sobic003G300800 Sobic006G179500--Sobic003G300800 Sobic006G179500--Sobic003G430400 Sobic006G179500--Sobic006G165100 Sobic006G089300 Sobic006G089300 Sobic006G179500--Sobic006G089300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.