Gene annotation
Transcriptome id Sobic.002G131800.4
Synonym Sb02g011340, RGLG1
Functional annotation copine, putative, expressed
UniProt C5X5U4
Pfam PF07002
Panther DB PTHR10857 PTHR10857:SF52
NCBI CDD -
KEGG Orthology K16280; E3 ubiquitin-protein ligase RGLG
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G01650 : RING domain ligase1
RAP-DB (Rice) LOC_Os12g19030.1 : copine, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat TraesCS7B02G134400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G441100 immediate-early fungal elicitor protein CMPG1, putative, expressed -
2 Sobic.006G066200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@prephenate dehydratase domain containing protein, expressed K05359: ADT, arogenate/prephenate dehydratase
3 Sobic.002G140300 plastocyanin-like domain containing protein, putative, expressed -
4 Sobic.006G179500 protein kinase APK1B, chloroplast precursor, putative, expressed -
5 Sobic.009G217600 STE_MEKK_ste11_MAP3K.19 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
6 Sobic.001G341600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tyrosine protein kinase domain containing protein, putative, expressed -
7 Sobic.001G077400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K01723: hydroperoxide dehydratase
8 Sobic.001G035000 ZOS3-22 - C2H2 zinc finger protein, expressed -
9 Sobic.006G165100 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -
10 Sobic.006G228300 ethylene-responsive protein related, putative, expressed -
11 Sobic.001G209800 harpin-induced protein 1 domain containing protein, expressed -
12 Sobic.008G042900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@harpin-induced protein 1 domain containing protein, expressed -
13 Sobic.002G374100 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
14 Sobic.001G538866 - -
15 Sobic.001G040200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAC domain-containing protein 67, putative, expressed -
16 Sobic.003G324400 Not investigated(PubMedID : 23766026)@Contribute to rice salt tolerance under a salt inducible abscisic acid 2 (ABA2) promoter(PubMedID : 28393269)@AP2 domain containing protein, expressed -
17 Sobic.010G200700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.002G294700 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -
19 Sobic.002G036100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed -
20 Sobic.004G280900 zinc finger, C3HC4 type domain containing protein, expressed -


Gene co-expression network
sample Sobic002G131800 Sobic002G131800 Sobic001G441100 Sobic001G441100 Sobic002G131800--Sobic001G441100 Sobic006G066200 Sobic006G066200 Sobic002G131800--Sobic006G066200 Sobic002G140300 Sobic002G140300 Sobic002G131800--Sobic002G140300 Sobic006G179500 Sobic006G179500 Sobic002G131800--Sobic006G179500 Sobic009G217600 Sobic009G217600 Sobic002G131800--Sobic009G217600 Sobic001G341600 Sobic001G341600 Sobic002G131800--Sobic001G341600 Sobic001G077400 Sobic001G077400 Sobic002G131800--Sobic001G077400 Sobic001G035000 Sobic001G035000 Sobic002G131800--Sobic001G035000 Sobic006G165100 Sobic006G165100 Sobic002G131800--Sobic006G165100 Sobic001G441100--Sobic001G035000 Sobic001G441100--Sobic009G217600 Sobic001G441100--Sobic001G077400 Sobic001G441100--Sobic001G341600 Sobic005G037000 Sobic005G037000 Sobic001G441100--Sobic005G037000 Sobic004G280900 Sobic004G280900 Sobic001G441100--Sobic004G280900 Sobic002G278500 Sobic002G278500 Sobic001G441100--Sobic002G278500 Sobic001G209800 Sobic001G209800 Sobic001G441100--Sobic001G209800 Sobic001G441100--Sobic002G140300 Sobic003G430400 Sobic003G430400 Sobic006G066200--Sobic003G430400 Sobic006G066200--Sobic002G140300 Sobic004G222500 Sobic004G222500 Sobic006G066200--Sobic004G222500 Sobic009G247900 Sobic009G247900 Sobic006G066200--Sobic009G247900 Sobic004G341800 Sobic004G341800 Sobic006G066200--Sobic004G341800 Sobic001G040200 Sobic001G040200 Sobic006G066200--Sobic001G040200 Sobic003G092900 Sobic003G092900 Sobic006G066200--Sobic003G092900 Sobic006G066200--Sobic002G131800 Sobic006G066200--Sobic006G179500 Sobic002G140300--Sobic006G179500 Sobic002G140300--Sobic001G040200 Sobic002G140300--Sobic006G165100 Sobic002G140300--Sobic004G222500 Sobic001G538866 Sobic001G538866 Sobic002G140300--Sobic001G538866 Sobic009G036100 Sobic009G036100 Sobic002G140300--Sobic009G036100 Sobic006G183400 Sobic006G183400 Sobic002G140300--Sobic006G183400 Sobic003G324400 Sobic003G324400 Sobic002G140300--Sobic003G324400 Sobic002G140300--Sobic009G247900 Sobic006G179500--Sobic002G140300 Sobic002G359300 Sobic002G359300 Sobic006G179500--Sobic002G359300 Sobic006G179500--Sobic006G183400 Sobic006G179500--Sobic001G040200 Sobic006G179500--Sobic004G222500 Sobic003G300800 Sobic003G300800 Sobic006G179500--Sobic003G300800 Sobic006G179500--Sobic003G430400 Sobic006G179500--Sobic006G165100 Sobic006G089300 Sobic006G089300 Sobic006G179500--Sobic006G089300 Sobic009G217600--Sobic001G441100 Sobic009G217600--Sobic001G341600 Sobic009G217600--Sobic001G077400 Sobic009G217600--Sobic001G035000 Sobic009G217600--Sobic004G280900 Sobic009G217600--Sobic001G209800 Sobic009G217600--Sobic005G037000 Sobic003G353800 Sobic003G353800 Sobic009G217600--Sobic003G353800 Sobic009G217600--Sobic002G278500 Sobic001G341600--Sobic009G217600 Sobic001G341600--Sobic001G441100 Sobic001G341600--Sobic001G035000 Sobic001G341600--Sobic001G077400 Sobic001G341600--Sobic004G280900 Sobic001G341600--Sobic002G140300 Sobic001G341600--Sobic003G353800 Sobic001G341600--Sobic002G278500 Sobic001G341600--Sobic001G538866 Sobic001G077400--Sobic004G280900 Sobic001G077400--Sobic005G037000 Sobic001G077400--Sobic001G209800 Sobic001G077400--Sobic001G441100 Sobic001G077400--Sobic009G217600 Sobic001G077400--Sobic001G035000 Sobic002G036100 Sobic002G036100 Sobic001G077400--Sobic002G036100 Sobic001G077400--Sobic006G165100 Sobic001G077400--Sobic001G341600 Sobic001G035000--Sobic001G441100 Sobic001G035000--Sobic001G077400 Sobic001G035000--Sobic009G217600 Sobic001G035000--Sobic005G037000 Sobic001G035000--Sobic001G341600 Sobic001G035000--Sobic001G209800 Sobic007G122500 Sobic007G122500 Sobic001G035000--Sobic007G122500 Sobic007G126300 Sobic007G126300 Sobic001G035000--Sobic007G126300 Sobic001G035000--Sobic004G280900 Sobic006G165100--Sobic002G140300 Sobic006G165100--Sobic003G324400 Sobic006G165100--Sobic001G077400 Sobic001G052300 Sobic001G052300 Sobic006G165100--Sobic001G052300 Sobic006G165100--Sobic002G036100 Sobic006G165100--Sobic009G036100 Sobic009G255500 Sobic009G255500 Sobic006G165100--Sobic009G255500 Sobic006G165100--Sobic004G280900 Sobic009G200700 Sobic009G200700 Sobic006G165100--Sobic009G200700
Octagon: transcription factors


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