Gene annotation
| Transcriptome id | Sobic.001G209800.1 |
|---|---|
| Synonym | Sb01g018550 |
| Functional annotation | harpin-induced protein 1 domain containing protein, expressed |
| UniProt | A0A1B6QK22 |
| Pfam | PF03168 |
| Panther DB | PTHR31852 PTHR31852:SF1 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT1G65690 : Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
|---|---|
| RAP-DB (Rice) | LOC_Os02g30450.1 : harpin-induced protein 1 domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a017511 , Zm00025a006511 |
| Brachypodium | KQJ97240 |
| Barley | HORVU1Hr1G044080.2 , HORVU1Hr1G044080.1 |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G077400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed | K01723: hydroperoxide dehydratase |
| 2 | Sobic.004G280900 | zinc finger, C3HC4 type domain containing protein, expressed | - |
| 3 | Sobic.009G217600 | STE_MEKK_ste11_MAP3K.19 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed | - |
| 4 | Sobic.001G035000 | ZOS3-22 - C2H2 zinc finger protein, expressed | - |
| 5 | Sobic.005G037000 | cytochrome P450, putative, expressed | - |
| 6 | Sobic.001G441100 | immediate-early fungal elicitor protein CMPG1, putative, expressed | - |
| 7 | Sobic.010G076600 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Serine/threonine-protein kinase RIPK(PubMedID : 31721651)@tyrosine protein kinase domain containing protein, putative, expressed | - |
| 8 | Sobic.001G341600 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tyrosine protein kinase domain containing protein, putative, expressed | - |
| 9 | Sobic.006G274300 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@harpin-induced protein 1 domain containing protein, expressed | - |
| 10 | Sobic.002G036100 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed | - |
| 11 | Sobic.009G184400 | Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | - |
| 12 | Sobic.008G036000 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed | - |
| 13 | Sobic.009G071800 | 6-phosphofructokinase, putative, expressed | K00850: pfkA, 6-phosphofructokinase 1 |
| 14 | Sobic.001G473900 | Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed | K09286: EREBP-like factor |
| 15 | Sobic.007G126300 | spotted leaf 11, putative, expressed | - |
| 16 | Sobic.002G131800 | copine, putative, expressed | K16280: E3 ubiquitin-protein ligase RGLG |
| 17 | Sobic.001G538866 | - | - |
| 18 | Sobic.001G077700 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 19 | Sobic.003G268700 | STE_MEKK_ste11_MAP3K.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed | - |
| 20 | Sobic.006G165100 | Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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