Gene annotation
| Transcriptome id | Sobic.007G126300.2 |
|---|---|
| Synonym | Sb07g020290, PUB18, ATPUB18 |
| Functional annotation | spotted leaf 11, putative, expressed |
| UniProt | A0A1Z5RAM0 |
| Pfam | PF00514 PF04564 |
| Panther DB | PTHR23315 PTHR23315:SF116 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0005515; protein binding GO:0016567protein ubiquitination GO:0004842ubiquitin-protein transferase activity |
Orthologs (automatic annotation)
| TAIR | AT1G60190 : ARM repeat superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os08g32060.1 : spotted leaf 11, putative, expressed |
| MaizeGDB (Corn) | Zm00025a031034 |
| Brachypodium | PNT68096 |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.005G037000 | cytochrome P450, putative, expressed | - |
| 2 | Sobic.001G077400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed | K01723: hydroperoxide dehydratase |
| 3 | Sobic.001G441100 | immediate-early fungal elicitor protein CMPG1, putative, expressed | - |
| 4 | Sobic.004G280900 | zinc finger, C3HC4 type domain containing protein, expressed | - |
| 5 | Sobic.001G035000 | ZOS3-22 - C2H2 zinc finger protein, expressed | - |
| 6 | Sobic.006G165100 | Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed | - |
| 7 | Sobic.009G217600 | STE_MEKK_ste11_MAP3K.19 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed | - |
| 8 | Sobic.001G341600 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tyrosine protein kinase domain containing protein, putative, expressed | - |
| 9 | Sobic.001G209800 | harpin-induced protein 1 domain containing protein, expressed | - |
| 10 | Sobic.002G140300 | plastocyanin-like domain containing protein, putative, expressed | - |
| 11 | Sobic.007G122500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 12 | Sobic.002G036100 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed | - |
| 13 | Sobic.003G313800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytokinin dehydrogenase precursor, putative, expressed | K00279: cytokinin dehydrogenase |
| 14 | Sobic.009G120800 | OsCML15 - Calmodulin-related calcium sensor protein, expressed | K13448: calcium-binding protein CML |
| 15 | Sobic.001G538866 | - | - |
| 16 | Sobic.003G324400 | Not investigated(PubMedID : 23766026)@Contribute to rice salt tolerance under a salt inducible abscisic acid 2 (ABA2) promoter(PubMedID : 28393269)@AP2 domain containing protein, expressed | - |
| 17 | Sobic.003G092900 | expressed protein | - |
| 18 | Sobic.004G222500 | gibberellin 2-beta-dioxygenase 7, putative, expressed | K04125: gibberellin 2beta-dioxygenase |
| 19 | Sobic.008G042900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@harpin-induced protein 1 domain containing protein, expressed | - |
| 20 | Sobic.001G259600 | tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed | K13464: jasmonate ZIM domain-containing protein |
Gene co-expression network
Octagon: transcription factors
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