Gene annotation
| Transcriptome id | Sobic.007G122500.1 |
|---|---|
| Synonym | Sb07g019930 |
| Functional annotation | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543) expressed protein |
| UniProt | C5YKR6 |
| Pfam | PF05553 |
| Panther DB | PTHR33098 PTHR33098:SF2 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT4G04990 : Protein of unknown function (DUF761) |
|---|---|
| RAP-DB (Rice) | LOC_Os08g31090.1 : expressed protein |
| MaizeGDB (Corn) | Zm00025a006053 |
| Brachypodium | PNT68040 |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G035000 | ZOS3-22 - C2H2 zinc finger protein, expressed | - |
| 2 | Sobic.001G441100 | immediate-early fungal elicitor protein CMPG1, putative, expressed | - |
| 3 | Sobic.005G037000 | cytochrome P450, putative, expressed | - |
| 4 | Sobic.004G032300 | OsSGL(Ortholog in rice:Wang et al. (2016))(PubMedID : 31659876)@DUF1645 domain containing protein, putative, expressed | - |
| 5 | Sobic.009G120800 | OsCML15 - Calmodulin-related calcium sensor protein, expressed | K13448: calcium-binding protein CML |
| 6 | Sobic.002G225700 | Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | - |
| 7 | Sobic.007G126300 | spotted leaf 11, putative, expressed | - |
| 8 | Sobic.006G187900 | "Significantly enhanced the expression levels by drought stress, decreased markedly by silicon application"(PubMedID : 24813726)@aminotransferase, classes I and II, domain containing protein, expressed | K01762: 1-aminocyclopropane-1-carboxylate synthase |
| 9 | Sobic.009G217600 | STE_MEKK_ste11_MAP3K.19 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed | - |
| 10 | Sobic.002G269100 | "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | - |
| 11 | Sobic.001G077400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed | K01723: hydroperoxide dehydratase |
| 12 | Sobic.001G100501 | - | - |
| 13 | Sobic.004G319700 | ethylene-responsive transcription factor, putative, expressed | - |
| 14 | Sobic.001G341600 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tyrosine protein kinase domain containing protein, putative, expressed | - |
| 15 | Sobic.007G077200 | Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | - |
| 16 | Sobic.003G353800 | avr9/Cf-9 rapidly elicited protein, putative, expressed | - |
| 17 | Sobic.006G163401 | - | - |
| 18 | Sobic.004G097100 | F-box family protein, putative, expressed | - |
| 19 | Sobic.008G042900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@harpin-induced protein 1 domain containing protein, expressed | - |
| 20 | Sobic.004G280900 | zinc finger, C3HC4 type domain containing protein, expressed | - |
Gene co-expression network
Octagon: transcription factors
© 2015- RIKEN, All rights reserved.
