Gene annotation
| Transcriptome id | Sobic.002G225700.1 |
|---|---|
| Synonym | Sb02g026630, RRTF1, SbERF23, ethylene response factor 23 |
| Functional annotation | Not investigated (PubMedID : 23766026) AP2 domain containing protein, expressed |
| UniProt | C5X2B4 |
| Pfam | PF00847 |
| Panther DB | PTHR31677 PTHR31677:SF11 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity |
Orthologs (automatic annotation)
| TAIR | AT4G34410 : redox responsive transcription factor 1 |
|---|---|
| RAP-DB (Rice) | LOC_Os09g28440.1 : AP2 domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a005317 , Zm00025a022220 , Zm00025a003372 , Zm00025a037299 , Zm00025a014067 , Zm00025a005425 , Zm00025a043372 , Zm00025a000949 |
| Brachypodium | KQJ82323 , KQJ82324 , KQK23284 , PNT61078 , KQJ92086 , KQK00588 , KQK01756 |
| Barley | HORVU4Hr1G077310.1 , HORVU4Hr1G077310.2 , HORVU4Hr1G077310.3 , HORVU4Hr1G077310.4 , HORVU4Hr1G077310.7 , HORVU4Hr1G077310.8 , HORVU6Hr1G078520.1 , HORVU6Hr1G078520.2 , HORVU4Hr1G077310.5 , HORVU6Hr1G078510.4 , HORVU6Hr1G078510.1 , HORVU6Hr1G078510.3 , HORVU6Hr1G078510.2 , HORVU5Hr1G080790.4 , HORVU5Hr1G080790.3 , HORVU5Hr1G080790.2 , HORVU5Hr1G080790.1 , HORVU5Hr1G068450.1 , HORVU1Hr1G082310.1 |
| Wheat | TraesCS5D02G129400 , TraesCS5A02G112600 , TraesCS5B02G118200 , TraesCS4B02G299500 , TraesCS4A02G005600 , TraesCS4B02G299400 , TraesCS5B02G315500 , TraesCS5D02G320800 , TraesCS4D02G298400 , TraesCS5B02G315500 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G100501 | - | - |
| 2 | Sobic.007G122500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 3 | Sobic.010G104300 | Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed | K13993: HSP20 family protein |
| 4 | Sobic.006G163401 | - | - |
| 5 | Sobic.002G269100 | "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | - |
| 6 | Sobic.004G295600 | AP2 domain containing protein, expressed | - |
| 7 | Sobic.001G138200 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl transferase 8 domain containing protein, putative, expressed | - |
| 8 | Sobic.002G388800 | cytochrome P450 72A1, putative, expressed | - |
| 9 | Sobic.006G000800 | expressed protein | - |
| 10 | Sobic.009G136400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@alpha/beta hydrolase fold, putative, expressed | - |
| 11 | Sobic.001G495132 | - | - |
| 12 | Sobic.001G489500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 13 | Sobic.004G032300 | OsSGL(Ortholog in rice:Wang et al. (2016))(PubMedID : 31659876)@DUF1645 domain containing protein, putative, expressed | - |
| 14 | Sobic.003G207900 | transmembrane amino acid transporter protein, putative, expressed | K15015: SLC32A, solute carrier family 32 (vesicular inhibitory amino acid transporter) |
| 15 | Sobic.004G263100 | Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed | K13993: HSP20 family protein |
| 16 | Sobic.009G120800 | OsCML15 - Calmodulin-related calcium sensor protein, expressed | K13448: calcium-binding protein CML |
| 17 | Sobic.005G171001 | - | - |
| 18 | Sobic.007G159100 | expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@tetraspanin family protein, putative, expressed | - |
| 19 | Sobic.001G143100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, expressed | - |
| 20 | Sobic.004G097100 | F-box family protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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