Gene annotation
| Transcriptome id | Sobic.009G136400.1 |
|---|---|
| Synonym | AtCXE17, CXE17, Sb09g020230 |
| Functional annotation | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543) alpha/beta hydrolase fold, putative, expressed |
| UniProt | C5YXT7 |
| Pfam | PF12695 |
| Panther DB | PTHR23024 PTHR23024:SF168 |
| NCBI CDD | KOG1515; Arylacetamide deacetylase |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT5G16080 : carboxyesterase 17 |
|---|---|
| RAP-DB (Rice) | LOC_Os05g33940.1 : alpha/beta hydrolase fold, putative, expressed |
| MaizeGDB (Corn) | Zm00025a043680 , Zm00025a043681 , Zm00025a037446 |
| Brachypodium | KQK06280 |
| Barley | HORVU1Hr1G063380.1 , HORVU1Hr1G063450.1 |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.009G136400 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G100501 | - | - |
| 2 | Sobic.007G118301 | - | - |
| 3 | Sobic.001G449700 | highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@cytochrome P450, putative, expressed | K01723: hydroperoxide dehydratase |
| 4 | Sobic.002G225700 | Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | - |
| 5 | Sobic.006G216700 | "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@expressed protein | - |
| 6 | Sobic.001G295700 | Triacylglycerol lipase like protein (Os)(PubMedID : 27208977)@triacylglycerol lipase like protein, putative, expressed | - |
| 7 | Sobic.001G259700 | tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed | K13464: jasmonate ZIM domain-containing protein |
| 8 | Sobic.003G207900 | transmembrane amino acid transporter protein, putative, expressed | K15015: SLC32A, solute carrier family 32 (vesicular inhibitory amino acid transporter) |
| 9 | Sobic.001G077600 | expressed protein | - |
| 10 | Sobic.004G169200 | U-box domain-containing protein, putative, expressed | - |
| 11 | Sobic.010G104300 | Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed | K13993: HSP20 family protein |
| 12 | Sobic.006G263600 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 13 | Sobic.002G269100 | "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | - |
| 14 | Sobic.004G097100 | F-box family protein, putative, expressed | - |
| 15 | Sobic.001G196900 | "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@CPuORF40 - conserved peptide uORF-containing transcript, expressed | K14488: SAUR family protein |
| 16 | Sobic.001G383700 | OsCML27 - Calmodulin-related calcium sensor protein, expressed | K13448: calcium-binding protein CML |
| 17 | Sobic.010G105300 | hydrolase, NUDIX family, domain containing protein, expressed | K07766: diphosphoinositol-polyphosphate diphosphatase |
| 18 | Sobic.001G088300 | - | - |
| 19 | Sobic.003G102200 | helix-loop-helix DNA-binding domain containing protein, expressed | - |
| 20 | Sobic.001G138200 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl transferase 8 domain containing protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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