Gene annotation
Transcriptome id Sobic.001G196900.1
Synonym SbSAUR8, Sb01g017330, small auxin up RNA
Functional annotation "domain confirmed by Pfam database, expression not supported" (PubMedID : 20499123)
CPuORF40 - conserved peptide uORF-containing transcript, expressed
UniProt C5WW89
Pfam PF02519
Panther DB PTHR31374 PTHR31374:SF53
NCBI CDD -
KEGG Orthology K14488; SAUR family protein
Gene Ontology GO:0009733; response to auxin


Orthologs (automatic annotation)
TAIR AT2G46690 : SAUR-like auxin-responsive protein family
RAP-DB (Rice) LOC_Os10g36703.1 : CPuORF40 - conserved peptide uORF-containing transcript, expressed
MaizeGDB (Corn) Zm00025a017439 , Zm00025a006346
Brachypodium PNT67692
Barley HORVU1Hr1G047390.1 , HORVU1Hr1G072420.1
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.001G196900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G192800 AAA-type ATPase family protein, putative, expressed -
2 Sobic.001G341600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tyrosine protein kinase domain containing protein, putative, expressed -
3 Sobic.009G217500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_MEKK_ste11_MAP3K.18 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
4 Sobic.007G145700 expressed protein -
5 Sobic.009G217600 STE_MEKK_ste11_MAP3K.19 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
6 Sobic.010G102000 U-box protein CMPG1, putative, expressed -
7 Sobic.001G035000 ZOS3-22 - C2H2 zinc finger protein, expressed -
8 Sobic.003G341100 WRKY24, expressed K13424: WRKY transcription factor 33
9 Sobic.001G441100 immediate-early fungal elicitor protein CMPG1, putative, expressed -
10 Sobic.003G416500 SRC2 protein, putative, expressed -
11 Sobic.001G489500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.003G353800 avr9/Cf-9 rapidly elicited protein, putative, expressed -
13 Sobic.009G120800 OsCML15 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
14 Sobic.010G023200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.002G232800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed K10664: E3 ubiquitin-protein ligase ATL6/9/15/31/42/55
16 Sobic.006G273800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
17 Sobic.010G105300 hydrolase, NUDIX family, domain containing protein, expressed K07766: diphosphoinositol-polyphosphate diphosphatase
18 Sobic.002G341900 - -
19 Sobic.007G122500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.002G278500 nodulin, putative, expressed -


Gene co-expression network
sample Sobic001G196900 Sobic001G196900 Sobic001G192800 Sobic001G192800 Sobic001G196900--Sobic001G192800 Sobic001G341600 Sobic001G341600 Sobic001G196900--Sobic001G341600 Sobic009G217500 Sobic009G217500 Sobic001G196900--Sobic009G217500 Sobic007G145700 Sobic007G145700 Sobic001G196900--Sobic007G145700 Sobic009G217600 Sobic009G217600 Sobic001G196900--Sobic009G217600 Sobic010G102000 Sobic010G102000 Sobic001G196900--Sobic010G102000 Sobic001G035000 Sobic001G035000 Sobic001G196900--Sobic001G035000 Sobic003G341100 Sobic003G341100 Sobic001G196900--Sobic003G341100 Sobic001G441100 Sobic001G441100 Sobic001G196900--Sobic001G441100 Sobic001G192800--Sobic001G196900 Sobic001G192800--Sobic009G217600 Sobic001G192800--Sobic001G035000 Sobic001G192800--Sobic009G217500 Sobic001G192800--Sobic003G341100 Sobic003G361100 Sobic003G361100 Sobic001G192800--Sobic003G361100 Sobic006G273800 Sobic006G273800 Sobic001G192800--Sobic006G273800 Sobic006G184400 Sobic006G184400 Sobic001G192800--Sobic006G184400 Sobic001G192800--Sobic001G341600 Sobic001G341600--Sobic009G217600 Sobic001G341600--Sobic001G441100 Sobic001G341600--Sobic001G035000 Sobic001G077400 Sobic001G077400 Sobic001G341600--Sobic001G077400 Sobic004G280900 Sobic004G280900 Sobic001G341600--Sobic004G280900 Sobic002G140300 Sobic002G140300 Sobic001G341600--Sobic002G140300 Sobic003G353800 Sobic003G353800 Sobic001G341600--Sobic003G353800 Sobic002G278500 Sobic002G278500 Sobic001G341600--Sobic002G278500 Sobic001G538866 Sobic001G538866 Sobic001G341600--Sobic001G538866 Sobic009G217500--Sobic006G273800 Sobic007G077100 Sobic007G077100 Sobic009G217500--Sobic007G077100 Sobic009G217500--Sobic003G341100 Sobic010G023200 Sobic010G023200 Sobic009G217500--Sobic010G023200 Sobic009G217500--Sobic010G102000 Sobic003G416500 Sobic003G416500 Sobic009G217500--Sobic003G416500 Sobic009G217500--Sobic001G341600 Sobic009G217500--Sobic001G035000 Sobic001G064900 Sobic001G064900 Sobic009G217500--Sobic001G064900 Sobic007G145700--Sobic003G341100 Sobic002G294600 Sobic002G294600 Sobic007G145700--Sobic002G294600 Sobic007G145700--Sobic010G102000 Sobic001G462800 Sobic001G462800 Sobic007G145700--Sobic001G462800 Sobic006G146500 Sobic006G146500 Sobic007G145700--Sobic006G146500 Sobic007G145700--Sobic009G217500 Sobic001G095700 Sobic001G095700 Sobic007G145700--Sobic001G095700 Sobic009G044400 Sobic009G044400 Sobic007G145700--Sobic009G044400 Sobic007G145700--Sobic006G273800 Sobic009G217600--Sobic001G441100 Sobic009G217600--Sobic001G341600 Sobic009G217600--Sobic001G077400 Sobic009G217600--Sobic001G035000 Sobic009G217600--Sobic004G280900 Sobic001G209800 Sobic001G209800 Sobic009G217600--Sobic001G209800 Sobic005G037000 Sobic005G037000 Sobic009G217600--Sobic005G037000 Sobic009G217600--Sobic003G353800 Sobic009G217600--Sobic002G278500 Sobic010G102000--Sobic009G217500 Sobic010G105300 Sobic010G105300 Sobic010G102000--Sobic010G105300 Sobic010G102000--Sobic003G341100 Sobic002G232800 Sobic002G232800 Sobic010G102000--Sobic002G232800 Sobic010G102000--Sobic001G064900 Sobic010G102000--Sobic007G145700 Sobic010G102000--Sobic010G023200 Sobic010G102000--Sobic007G077100 Sobic010G102000--Sobic006G273800 Sobic001G035000--Sobic001G441100 Sobic001G035000--Sobic001G077400 Sobic001G035000--Sobic009G217600 Sobic001G035000--Sobic005G037000 Sobic001G035000--Sobic001G341600 Sobic001G035000--Sobic001G209800 Sobic007G122500 Sobic007G122500 Sobic001G035000--Sobic007G122500 Sobic007G126300 Sobic007G126300 Sobic001G035000--Sobic007G126300 Sobic001G035000--Sobic004G280900 Sobic003G341100--Sobic009G217500 Sobic003G341100--Sobic007G145700 Sobic003G341100--Sobic009G044400 Sobic003G341100--Sobic007G077100 Sobic003G341100--Sobic010G102000 Sobic003G341100--Sobic001G341600 Sobic003G341100--Sobic006G273800 Sobic003G341100--Sobic010G023200 Sobic002G118600 Sobic002G118600 Sobic003G341100--Sobic002G118600 Sobic001G441100--Sobic001G035000 Sobic001G441100--Sobic009G217600 Sobic001G441100--Sobic001G077400 Sobic001G441100--Sobic001G341600 Sobic001G441100--Sobic005G037000 Sobic001G441100--Sobic004G280900 Sobic001G441100--Sobic002G278500 Sobic001G441100--Sobic001G209800 Sobic001G441100--Sobic002G140300
Octagon: transcription factors


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