Gene annotation
Transcriptome id Sobic.002G341900.1
Synonym Sb02g036605
Functional annotation -
UniProt A0A1B6QF07
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.002G341900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G143400 tetraspanin family protein, putative, expressed -
2 Sobic.007G145700 expressed protein -
3 Sobic.010G102000 U-box protein CMPG1, putative, expressed -
4 Sobic.001G064900 syntaxin, putative, expressed K08486: syntaxin 1B/2/3
5 Sobic.002G294600 aspartic proteinase nepenthesin precursor, putative, expressed -
6 Sobic.001G489500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.001G095700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@helix-loop-helix DNA-binding domain containing protein, expressed -
8 Sobic.006G273800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
9 Sobic.009G217500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_MEKK_ste11_MAP3K.18 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
10 Sobic.010G105300 hydrolase, NUDIX family, domain containing protein, expressed K07766: diphosphoinositol-polyphosphate diphosphatase
11 Sobic.009G010400 zinc finger, RING-type, putative, expressed -
12 Sobic.003G416500 SRC2 protein, putative, expressed -
13 Sobic.001G196900 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@CPuORF40 - conserved peptide uORF-containing transcript, expressed K14488: SAUR family protein
14 Sobic.010G023200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.003G341100 WRKY24, expressed K13424: WRKY transcription factor 33
16 Sobic.002G217100 tyrosine protein kinase domain containing protein, putative, expressed -
17 Sobic.004G305000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed K10664: E3 ubiquitin-protein ligase ATL6/9/15/31/42/55
18 Sobic.006G146500 NB-ARC/LRR disease resistance protein, putative, expressed K13459: disease resistance protein RPS2
19 Sobic.001G192800 AAA-type ATPase family protein, putative, expressed -
20 Sobic.004G086800 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase


Gene co-expression network
sample Sobic002G341900 Sobic002G341900 Sobic007G143400 Sobic007G143400 Sobic002G341900--Sobic007G143400 Sobic007G145700 Sobic007G145700 Sobic002G341900--Sobic007G145700 Sobic010G102000 Sobic010G102000 Sobic002G341900--Sobic010G102000 Sobic001G064900 Sobic001G064900 Sobic002G341900--Sobic001G064900 Sobic002G294600 Sobic002G294600 Sobic002G341900--Sobic002G294600 Sobic001G489500 Sobic001G489500 Sobic002G341900--Sobic001G489500 Sobic001G095700 Sobic001G095700 Sobic002G341900--Sobic001G095700 Sobic006G273800 Sobic006G273800 Sobic002G341900--Sobic006G273800 Sobic009G217500 Sobic009G217500 Sobic002G341900--Sobic009G217500 Sobic007G143400--Sobic002G341900 Sobic007G143400--Sobic001G095700 Sobic007G143400--Sobic002G294600 Sobic002G217100 Sobic002G217100 Sobic007G143400--Sobic002G217100 Sobic001G462800 Sobic001G462800 Sobic007G143400--Sobic001G462800 Sobic003G268900 Sobic003G268900 Sobic007G143400--Sobic003G268900 Sobic002G367900 Sobic002G367900 Sobic007G143400--Sobic002G367900 Sobic006G210300 Sobic006G210300 Sobic007G143400--Sobic006G210300 Sobic004G065900 Sobic004G065900 Sobic007G143400--Sobic004G065900 Sobic003G341100 Sobic003G341100 Sobic007G145700--Sobic003G341100 Sobic007G145700--Sobic002G294600 Sobic007G145700--Sobic010G102000 Sobic007G145700--Sobic001G462800 Sobic006G146500 Sobic006G146500 Sobic007G145700--Sobic006G146500 Sobic007G145700--Sobic009G217500 Sobic007G145700--Sobic001G095700 Sobic009G044400 Sobic009G044400 Sobic007G145700--Sobic009G044400 Sobic007G145700--Sobic006G273800 Sobic010G102000--Sobic009G217500 Sobic010G105300 Sobic010G105300 Sobic010G102000--Sobic010G105300 Sobic010G102000--Sobic003G341100 Sobic002G232800 Sobic002G232800 Sobic010G102000--Sobic002G232800 Sobic010G102000--Sobic001G064900 Sobic010G102000--Sobic007G145700 Sobic010G023200 Sobic010G023200 Sobic010G102000--Sobic010G023200 Sobic007G077100 Sobic007G077100 Sobic010G102000--Sobic007G077100 Sobic010G102000--Sobic006G273800 Sobic001G064900--Sobic010G102000 Sobic001G064900--Sobic009G217500 Sobic001G064900--Sobic006G273800 Sobic001G064900--Sobic010G023200 Sobic006G257700 Sobic006G257700 Sobic001G064900--Sobic006G257700 Sobic006G259000 Sobic006G259000 Sobic001G064900--Sobic006G259000 Sobic001G064900--Sobic007G077100 Sobic001G064900--Sobic001G095700 Sobic001G064900--Sobic003G341100 Sobic002G294600--Sobic007G145700 Sobic002G294600--Sobic001G462800 Sobic002G294600--Sobic001G095700 Sobic002G294600--Sobic002G367900 Sobic002G294600--Sobic004G065900 Sobic002G294600--Sobic002G217100 Sobic002G294600--Sobic003G341100 Sobic002G294600--Sobic006G146500 Sobic001G118900 Sobic001G118900 Sobic002G294600--Sobic001G118900 Sobic003G416500 Sobic003G416500 Sobic001G489500--Sobic003G416500 Sobic001G489500--Sobic010G023200 Sobic001G489500--Sobic009G217500 Sobic001G489500--Sobic006G273800 Sobic001G489500--Sobic007G077100 Sobic001G489500--Sobic006G259000 Sobic009G120800 Sobic009G120800 Sobic001G489500--Sobic009G120800 Sobic003G353800 Sobic003G353800 Sobic001G489500--Sobic003G353800 Sobic002G323900 Sobic002G323900 Sobic001G489500--Sobic002G323900 Sobic001G095700--Sobic004G065900 Sobic001G095700--Sobic003G268900 Sobic001G095700--Sobic002G294600 Sobic001G095700--Sobic002G367900 Sobic001G095700--Sobic007G145700 Sobic001G095700--Sobic006G273800 Sobic007G051800 Sobic007G051800 Sobic001G095700--Sobic007G051800 Sobic001G095700--Sobic001G064900 Sobic001G095700--Sobic003G341100 Sobic006G273800--Sobic009G217500 Sobic006G273800--Sobic010G023200 Sobic006G273800--Sobic007G077100 Sobic006G273800--Sobic003G341100 Sobic001G370600 Sobic001G370600 Sobic006G273800--Sobic001G370600 Sobic006G273800--Sobic003G416500 Sobic006G273800--Sobic001G064900 Sobic001G035000 Sobic001G035000 Sobic006G273800--Sobic001G035000 Sobic010G234000 Sobic010G234000 Sobic006G273800--Sobic010G234000 Sobic009G217500--Sobic006G273800 Sobic009G217500--Sobic007G077100 Sobic009G217500--Sobic003G341100 Sobic009G217500--Sobic010G023200 Sobic009G217500--Sobic010G102000 Sobic009G217500--Sobic003G416500 Sobic001G341600 Sobic001G341600 Sobic009G217500--Sobic001G341600 Sobic009G217500--Sobic001G035000 Sobic009G217500--Sobic001G064900
Octagon: transcription factors


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