Gene annotation
Transcriptome id Sobic.004G305000.1
Synonym CNI1, Sb04g033820, ATL31
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A1Z5RQQ7
Pfam PF13639
Panther DB PTHR14155
NCBI CDD -
KEGG Orthology K10664; E3 ubiquitin-protein ligase ATL6/9/15/31/42/55
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G05200 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os02g52210.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a022172 , Zm00025a033125 , Zm00025a042531
Brachypodium KQK18976 , PNT69595 , PNT69597 , PNT69596
Barley HORVU4Hr1G022090.1 , HORVU4Hr1G080840.1 , HORVU7Hr1G036380.2 , HORVU6Hr1G077610.2 , HORVU6Hr1G077610.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G184400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
2 Sobic.001G192800 AAA-type ATPase family protein, putative, expressed -
3 Sobic.006G273800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
4 Sobic.007G077001 - -
5 Sobic.002G217100 tyrosine protein kinase domain containing protein, putative, expressed -
6 Sobic.003G353800 avr9/Cf-9 rapidly elicited protein, putative, expressed -
7 Sobic.006G210300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
8 Sobic.010G076600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Serine/threonine-protein kinase RIPK(PubMedID : 31721651)@tyrosine protein kinase domain containing protein, putative, expressed -
9 Sobic.009G217500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_MEKK_ste11_MAP3K.18 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
10 Sobic.003G361100 hs1, putative, expressed -
11 Sobic.001G064900 syntaxin, putative, expressed K08486: syntaxin 1B/2/3
12 Sobic.009G217600 STE_MEKK_ste11_MAP3K.19 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
13 Sobic.001G462800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
14 Sobic.010G102000 U-box protein CMPG1, putative, expressed -
15 Sobic.002G341900 - -
16 Sobic.009G071800 6-phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
17 Sobic.001G398500 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@long cell-linked locus protein, putative, expressed -
18 Sobic.001G341600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tyrosine protein kinase domain containing protein, putative, expressed -
19 Sobic.001G476400 - -
20 Sobic.009G204100 expressed protein -


Gene co-expression network
sample Sobic004G305000 Sobic004G305000 Sobic006G184400 Sobic006G184400 Sobic004G305000--Sobic006G184400 Sobic001G192800 Sobic001G192800 Sobic004G305000--Sobic001G192800 Sobic006G273800 Sobic006G273800 Sobic004G305000--Sobic006G273800 Sobic007G077001 Sobic007G077001 Sobic004G305000--Sobic007G077001 Sobic002G217100 Sobic002G217100 Sobic004G305000--Sobic002G217100 Sobic003G353800 Sobic003G353800 Sobic004G305000--Sobic003G353800 Sobic006G210300 Sobic006G210300 Sobic004G305000--Sobic006G210300 Sobic010G076600 Sobic010G076600 Sobic004G305000--Sobic010G076600 Sobic009G217500 Sobic009G217500 Sobic004G305000--Sobic009G217500 Sobic006G184400--Sobic004G305000 Sobic006G184400--Sobic010G076600 Sobic006G184400--Sobic002G217100 Sobic006G184400--Sobic006G210300 Sobic001G398500 Sobic001G398500 Sobic006G184400--Sobic001G398500 Sobic006G184400--Sobic001G192800 Sobic003G361100 Sobic003G361100 Sobic006G184400--Sobic003G361100 Sobic009G071800 Sobic009G071800 Sobic006G184400--Sobic009G071800 Sobic006G184400--Sobic003G353800 Sobic001G196900 Sobic001G196900 Sobic001G192800--Sobic001G196900 Sobic009G217600 Sobic009G217600 Sobic001G192800--Sobic009G217600 Sobic001G035000 Sobic001G035000 Sobic001G192800--Sobic001G035000 Sobic001G192800--Sobic009G217500 Sobic003G341100 Sobic003G341100 Sobic001G192800--Sobic003G341100 Sobic001G192800--Sobic003G361100 Sobic001G192800--Sobic006G273800 Sobic001G192800--Sobic006G184400 Sobic001G341600 Sobic001G341600 Sobic001G192800--Sobic001G341600 Sobic006G273800--Sobic009G217500 Sobic010G023200 Sobic010G023200 Sobic006G273800--Sobic010G023200 Sobic007G077100 Sobic007G077100 Sobic006G273800--Sobic007G077100 Sobic006G273800--Sobic003G341100 Sobic001G370600 Sobic001G370600 Sobic006G273800--Sobic001G370600 Sobic003G416500 Sobic003G416500 Sobic006G273800--Sobic003G416500 Sobic001G064900 Sobic001G064900 Sobic006G273800--Sobic001G064900 Sobic006G273800--Sobic001G035000 Sobic010G234000 Sobic010G234000 Sobic006G273800--Sobic010G234000 Sobic006G095600 Sobic006G095600 Sobic007G077001--Sobic006G095600 Sobic001G077700 Sobic001G077700 Sobic007G077001--Sobic001G077700 Sobic007G077001--Sobic009G071800 Sobic002G036100 Sobic002G036100 Sobic007G077001--Sobic002G036100 Sobic004G084100 Sobic004G084100 Sobic007G077001--Sobic004G084100 Sobic001G489600 Sobic001G489600 Sobic007G077001--Sobic001G489600 Sobic002G248100 Sobic002G248100 Sobic007G077001--Sobic002G248100 Sobic007G077001--Sobic004G305000 Sobic008G036000 Sobic008G036000 Sobic007G077001--Sobic008G036000 Sobic002G217100--Sobic006G210300 Sobic001G081600 Sobic001G081600 Sobic002G217100--Sobic001G081600 Sobic001G462800 Sobic001G462800 Sobic002G217100--Sobic001G462800 Sobic004G281200 Sobic004G281200 Sobic002G217100--Sobic004G281200 Sobic002G197600 Sobic002G197600 Sobic002G217100--Sobic002G197600 Sobic010G016500 Sobic010G016500 Sobic002G217100--Sobic010G016500 Sobic004G244300 Sobic004G244300 Sobic002G217100--Sobic004G244300 Sobic009G167000 Sobic009G167000 Sobic002G217100--Sobic009G167000 Sobic004G244100 Sobic004G244100 Sobic002G217100--Sobic004G244100 Sobic003G353800--Sobic009G217600 Sobic003G353800--Sobic001G341600 Sobic001G441100 Sobic001G441100 Sobic003G353800--Sobic001G441100 Sobic003G353800--Sobic001G035000 Sobic002G278500 Sobic002G278500 Sobic003G353800--Sobic002G278500 Sobic001G077400 Sobic001G077400 Sobic003G353800--Sobic001G077400 Sobic003G353800--Sobic009G217500 Sobic008G042900 Sobic008G042900 Sobic003G353800--Sobic008G042900 Sobic003G353800--Sobic003G416500 Sobic006G210300--Sobic002G217100 Sobic006G210300--Sobic004G281200 Sobic006G210300--Sobic001G081600 Sobic006G210300--Sobic002G197600 Sobic006G210300--Sobic001G462800 Sobic002G367900 Sobic002G367900 Sobic006G210300--Sobic002G367900 Sobic006G210300--Sobic010G016500 Sobic006G210300--Sobic004G244100 Sobic006G210300--Sobic006G184400 Sobic010G076600--Sobic006G184400 Sobic001G209800 Sobic001G209800 Sobic010G076600--Sobic001G209800 Sobic001G476400 Sobic001G476400 Sobic010G076600--Sobic001G476400 Sobic001G473900 Sobic001G473900 Sobic010G076600--Sobic001G473900 Sobic010G076600--Sobic009G217600 Sobic003G338900 Sobic003G338900 Sobic010G076600--Sobic003G338900 Sobic010G076600--Sobic008G036000 Sobic010G076600--Sobic006G095600 Sobic003G296700 Sobic003G296700 Sobic010G076600--Sobic003G296700 Sobic009G217500--Sobic006G273800 Sobic009G217500--Sobic007G077100 Sobic009G217500--Sobic003G341100 Sobic009G217500--Sobic010G023200 Sobic010G102000 Sobic010G102000 Sobic009G217500--Sobic010G102000 Sobic009G217500--Sobic003G416500 Sobic009G217500--Sobic001G341600 Sobic009G217500--Sobic001G035000 Sobic009G217500--Sobic001G064900
Octagon: transcription factors


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