Gene annotation
Transcriptome id Sobic.001G398500.1
Synonym Sb01g037730,
Functional annotation expressed high in San Chi San (an efficient nitrogen user) (PubMedID : 28697783)
"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
long cell-linked locus protein, putative, expressed
UniProt A0A1B6QNP0
Pfam PF05553
Panther DB PTHR11742 PTHR11742:SF51
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016020; membrane GO:0005509calcium ion binding GO:0004571mannosyl-oligosaccharide 1,2-alpha-mannosidase activity


Orthologs (automatic annotation)
TAIR AT4G02170 : -
RAP-DB (Rice) LOC_Os03g19070.1 : long cell-linked locus protein, putative, expressed
MaizeGDB (Corn) Zm00025a052600 , Zm00025a002096
Brachypodium PNT77549
Barley HORVU4Hr1G054480.2 , HORVU4Hr1G054480.1
Wheat TraesCS4D02G187500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G071800 6-phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
2 Sobic.002G217100 tyrosine protein kinase domain containing protein, putative, expressed -
3 Sobic.006G184400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
4 Sobic.003G150400 Trihelix Family(PubMedID : 24864043)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@homeodomain, putative, expressed -
5 Sobic.009G184400 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
6 Sobic.001G476400 - -
7 Sobic.001G209800 harpin-induced protein 1 domain containing protein, expressed -
8 Sobic.001G077700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.010G076700 expressed protein -
10 Sobic.006G210300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
11 Sobic.009G217600 STE_MEKK_ste11_MAP3K.19 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
12 Sobic.003G338900 expressed protein -
13 Sobic.001G441100 immediate-early fungal elicitor protein CMPG1, putative, expressed -
14 Sobic.010G076600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Serine/threonine-protein kinase RIPK(PubMedID : 31721651)@tyrosine protein kinase domain containing protein, putative, expressed -
15 Sobic.001G092600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
16 Sobic.009G231400 Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@dnaJ domain containing protein, expressed K09510: DnaJ homolog subfamily B member 4
17 Sobic.001G035000 ZOS3-22 - C2H2 zinc finger protein, expressed -
18 Sobic.003G268700 STE_MEKK_ste11_MAP3K.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
19 Sobic.004G278100 DUF581 domain containing protein, expressed -
20 Sobic.001G081600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -


Gene co-expression network
sample Sobic001G398500 Sobic001G398500 Sobic009G071800 Sobic009G071800 Sobic001G398500--Sobic009G071800 Sobic002G217100 Sobic002G217100 Sobic001G398500--Sobic002G217100 Sobic006G184400 Sobic006G184400 Sobic001G398500--Sobic006G184400 Sobic003G150400 Sobic003G150400 Sobic001G398500--Sobic003G150400 Sobic009G184400 Sobic009G184400 Sobic001G398500--Sobic009G184400 Sobic001G476400 Sobic001G476400 Sobic001G398500--Sobic001G476400 Sobic001G209800 Sobic001G209800 Sobic001G398500--Sobic001G209800 Sobic001G077700 Sobic001G077700 Sobic001G398500--Sobic001G077700 Sobic010G076700 Sobic010G076700 Sobic001G398500--Sobic010G076700 Sobic009G071800--Sobic001G077700 Sobic002G203000 Sobic002G203000 Sobic009G071800--Sobic002G203000 Sobic010G234600 Sobic010G234600 Sobic009G071800--Sobic010G234600 Sobic002G248100 Sobic002G248100 Sobic009G071800--Sobic002G248100 Sobic002G294700 Sobic002G294700 Sobic009G071800--Sobic002G294700 Sobic009G071800--Sobic010G076700 Sobic009G071800--Sobic001G398500 Sobic001G473900 Sobic001G473900 Sobic009G071800--Sobic001G473900 Sobic006G095600 Sobic006G095600 Sobic009G071800--Sobic006G095600 Sobic006G210300 Sobic006G210300 Sobic002G217100--Sobic006G210300 Sobic001G081600 Sobic001G081600 Sobic002G217100--Sobic001G081600 Sobic001G462800 Sobic001G462800 Sobic002G217100--Sobic001G462800 Sobic004G281200 Sobic004G281200 Sobic002G217100--Sobic004G281200 Sobic002G197600 Sobic002G197600 Sobic002G217100--Sobic002G197600 Sobic010G016500 Sobic010G016500 Sobic002G217100--Sobic010G016500 Sobic004G244300 Sobic004G244300 Sobic002G217100--Sobic004G244300 Sobic009G167000 Sobic009G167000 Sobic002G217100--Sobic009G167000 Sobic004G244100 Sobic004G244100 Sobic002G217100--Sobic004G244100 Sobic004G305000 Sobic004G305000 Sobic006G184400--Sobic004G305000 Sobic010G076600 Sobic010G076600 Sobic006G184400--Sobic010G076600 Sobic006G184400--Sobic002G217100 Sobic006G184400--Sobic006G210300 Sobic006G184400--Sobic001G398500 Sobic001G192800 Sobic001G192800 Sobic006G184400--Sobic001G192800 Sobic003G361100 Sobic003G361100 Sobic006G184400--Sobic003G361100 Sobic006G184400--Sobic009G071800 Sobic003G353800 Sobic003G353800 Sobic006G184400--Sobic003G353800 Sobic003G150400--Sobic002G248100 Sobic003G150400--Sobic001G398500 Sobic003G150400--Sobic001G077700 Sobic003G150400--Sobic009G071800 Sobic003G150400--Sobic010G076600 Sobic010G030900 Sobic010G030900 Sobic003G150400--Sobic010G030900 Sobic007G180300 Sobic007G180300 Sobic003G150400--Sobic007G180300 Sobic003G150400--Sobic009G184400 Sobic003G150400--Sobic001G209800 Sobic009G184400--Sobic001G209800 Sobic001G441100 Sobic001G441100 Sobic009G184400--Sobic001G441100 Sobic009G217600 Sobic009G217600 Sobic009G184400--Sobic009G217600 Sobic001G035000 Sobic001G035000 Sobic009G184400--Sobic001G035000 Sobic009G184400--Sobic002G248100 Sobic009G184400--Sobic001G398500 Sobic009G184400--Sobic002G294700 Sobic001G077400 Sobic001G077400 Sobic009G184400--Sobic001G077400 Sobic009G184400--Sobic001G476400 Sobic001G063600 Sobic001G063600 Sobic001G476400--Sobic001G063600 Sobic001G051600 Sobic001G051600 Sobic001G476400--Sobic001G051600 Sobic001G476400--Sobic001G473900 Sobic001G476400--Sobic010G076600 Sobic001G476400--Sobic001G081600 Sobic010G080400 Sobic010G080400 Sobic001G476400--Sobic010G080400 Sobic001G476400--Sobic006G095600 Sobic004G283300 Sobic004G283300 Sobic001G476400--Sobic004G283300 Sobic001G489600 Sobic001G489600 Sobic001G476400--Sobic001G489600 Sobic001G209800--Sobic001G077400 Sobic004G280900 Sobic004G280900 Sobic001G209800--Sobic004G280900 Sobic001G209800--Sobic009G217600 Sobic001G209800--Sobic001G035000 Sobic005G037000 Sobic005G037000 Sobic001G209800--Sobic005G037000 Sobic001G209800--Sobic001G441100 Sobic001G209800--Sobic010G076600 Sobic001G341600 Sobic001G341600 Sobic001G209800--Sobic001G341600 Sobic006G274300 Sobic006G274300 Sobic001G209800--Sobic006G274300 Sobic001G077700--Sobic009G071800 Sobic001G077700--Sobic010G234600 Sobic001G077700--Sobic002G203000 Sobic001G077700--Sobic002G248100 Sobic001G077700--Sobic002G294700 Sobic008G177800 Sobic008G177800 Sobic001G077700--Sobic008G177800 Sobic004G286600 Sobic004G286600 Sobic001G077700--Sobic004G286600 Sobic010G234700 Sobic010G234700 Sobic001G077700--Sobic010G234700 Sobic001G077700--Sobic001G489600 Sobic010G076700--Sobic009G071800 Sobic010G076700--Sobic002G203000 Sobic009G231400 Sobic009G231400 Sobic010G076700--Sobic009G231400 Sobic010G076700--Sobic006G095600 Sobic010G076700--Sobic001G077700 Sobic010G076700--Sobic001G476400 Sobic009G163900 Sobic009G163900 Sobic010G076700--Sobic009G163900 Sobic010G076700--Sobic004G283300 Sobic004G025000 Sobic004G025000 Sobic010G076700--Sobic004G025000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.