Gene annotation
| Transcriptome id | Sobic.003G150400.1 |
|---|---|
| Synonym | SbTri12;SbTri12, Sb03g013050 |
| Functional annotation | Trihelix Family (PubMedID : 24864043) SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543) homeodomain, putative, expressed |
| UniProt | A0A1B6Q3A7 |
| Pfam | PF13837 |
| Panther DB | PTHR21654 PTHR21654:SF0 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT3G10040 : sequence-specific DNA binding transcription factors |
|---|---|
| RAP-DB (Rice) | LOC_Os12g06640.1 : homeodomain, putative, expressed |
| MaizeGDB (Corn) | Zm00025a020600 , Zm00025a031559 , Zm00025a036145 , Zm00025a024357 |
| Brachypodium | KQK04156 , PNT66844 , PNT70443 |
| Barley | HORVU3Hr1G021190.1 |
| Wheat | TraesCS3D02G118300 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G248100 | expressed protein | - |
| 2 | Sobic.001G398500 | expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@long cell-linked locus protein, putative, expressed | - |
| 3 | Sobic.001G077700 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 4 | Sobic.009G071800 | 6-phosphofructokinase, putative, expressed | K00850: pfkA, 6-phosphofructokinase 1 |
| 5 | Sobic.010G076600 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Serine/threonine-protein kinase RIPK(PubMedID : 31721651)@tyrosine protein kinase domain containing protein, putative, expressed | - |
| 6 | Sobic.010G030900 | glycosyltransferase, putative, expressed | - |
| 7 | Sobic.007G180300 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@HSF-type DNA-binding domain containing protein, expressed | K09419: heat shock transcription factor, other eukaryote |
| 8 | Sobic.009G184400 | Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | - |
| 9 | Sobic.001G209800 | harpin-induced protein 1 domain containing protein, expressed | - |
| 10 | Sobic.009G217600 | STE_MEKK_ste11_MAP3K.19 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed | - |
| 11 | Sobic.006G161400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heat shock protein STI, putative, expressed | K09553: stress-induced-phosphoprotein 1 |
| 12 | Sobic.006G184400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed | K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family |
| 13 | Sobic.010G234600 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed | - |
| 14 | Sobic.002G203000 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | - |
| 15 | Sobic.001G476400 | - | - |
| 16 | Sobic.001G473900 | Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed | K09286: EREBP-like factor |
| 17 | Sobic.008G177800 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@2-aminoethanethiol dioxygenase, putative, expressed | K10712: cysteamine dioxygenase |
| 18 | Sobic.006G194100 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@DUF581 domain containing protein, expressed | - |
| 19 | Sobic.009G231400 | Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@dnaJ domain containing protein, expressed | K09510: DnaJ homolog subfamily B member 4 |
| 20 | Sobic.006G095600 | lipoxygenase (LOX) that catalyzes the first committed step of JA biosynthesis(PubMedID : 31597271)@lipoxygenase protein, putative, expressed | K00454: lipoxygenase |
Gene co-expression network
Octagon: transcription factors
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