Gene annotation
Transcriptome id Sobic.006G095600.2,Sobic.006G095600.1
Synonym multi-seeded 2, MSD2, LOX3, Sb06g018040, SORBI_3006G095600
Functional annotation lipoxygenase (LOX) that catalyzes the first committed step of JA biosynthesis (PubMedID : 31597271)
lipoxygenase protein, putative, expressed
UniProt C5Y999 , C9DHL6 , A0A1Z5RDJ3
Pfam PF01477 PF00305
Panther DB PTHR11771 PTHR11771:SF38
NCBI CDD -
KEGG Orthology K00454; lipoxygenase
Gene Ontology GO:0005515; protein binding GO:0016702oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen


Orthologs (automatic annotation)
TAIR AT1G17420 : lipoxygenase 3
RAP-DB (Rice) LOC_Os03g08220.1 : lipoxygenase protein, putative, expressed
MaizeGDB (Corn) Zm00025a056147 , Zm00025a026458 , Zm00025a000916 , Zm00025a007726 , Zm00025a007722 , Zm00025a011206
Brachypodium KQJ82852 , KQK23327 , KQK23326
Barley HORVU5Hr1G054200.1 , HORVU5Hr1G055110.2 , HORVU5Hr1G055110.1 , HORVU4Hr1G076570.7 , HORVU4Hr1G076570.5 , HORVU4Hr1G076570.4 , HORVU4Hr1G076570.6 , HORVU5Hr1G117110.2 , HORVU5Hr1G117110.1
Wheat TraesCS5D02G388700 , TraesCS2D02G313400 , TraesCS2A02G315100 , TraesCS2A02G315100 , TraesCS5A02G378700 , TraesCS4D02G294100 , TraesCS2B02G333600 , TraesCS4A02G009400 , TraesCS4B02G295200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G489600 expressed protein -
2 Sobic.002G203000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
3 Sobic.001G051600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATPase, putative, expressed -
4 Sobic.001G077700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.009G071800 6-phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
6 Sobic.007G057100 expressed protein -
7 Sobic.004G084100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.001G473900 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
9 Sobic.001G476400 - -
10 Sobic.010G076700 expressed protein -
11 Sobic.004G025000 CAMK_CAMK_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
12 Sobic.010G076600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Serine/threonine-protein kinase RIPK(PubMedID : 31721651)@tyrosine protein kinase domain containing protein, putative, expressed -
13 Sobic.009G217600 STE_MEKK_ste11_MAP3K.19 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
14 Sobic.001G081600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
15 Sobic.003G296700 protein kinase domain containing protein, expressed -
16 Sobic.007G077001 - -
17 Sobic.001G290400 no apical meristem protein, putative, expressed -
18 Sobic.002G118600 SNARE domain containing protein, putative, expressed K18211: synaptosomal-associated protein 25
19 Sobic.002G294700 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -
20 Sobic.002G248100 expressed protein -


Gene co-expression network
sample Sobic006G095600 Sobic006G095600 Sobic001G489600 Sobic001G489600 Sobic006G095600--Sobic001G489600 Sobic002G203000 Sobic002G203000 Sobic006G095600--Sobic002G203000 Sobic001G051600 Sobic001G051600 Sobic006G095600--Sobic001G051600 Sobic001G077700 Sobic001G077700 Sobic006G095600--Sobic001G077700 Sobic009G071800 Sobic009G071800 Sobic006G095600--Sobic009G071800 Sobic007G057100 Sobic007G057100 Sobic006G095600--Sobic007G057100 Sobic004G084100 Sobic004G084100 Sobic006G095600--Sobic004G084100 Sobic001G473900 Sobic001G473900 Sobic006G095600--Sobic001G473900 Sobic001G476400 Sobic001G476400 Sobic006G095600--Sobic001G476400 Sobic001G489600--Sobic001G051600 Sobic001G489600--Sobic006G095600 Sobic001G489600--Sobic001G077700 Sobic001G489600--Sobic002G203000 Sobic001G489600--Sobic007G057100 Sobic004G280900 Sobic004G280900 Sobic001G489600--Sobic004G280900 Sobic001G489600--Sobic001G476400 Sobic001G489600--Sobic009G071800 Sobic004G286600 Sobic004G286600 Sobic001G489600--Sobic004G286600 Sobic002G203000--Sobic001G077700 Sobic002G203000--Sobic009G071800 Sobic002G203000--Sobic006G095600 Sobic002G203000--Sobic001G489600 Sobic010G076700 Sobic010G076700 Sobic002G203000--Sobic010G076700 Sobic009G258300 Sobic009G258300 Sobic002G203000--Sobic009G258300 Sobic002G203000--Sobic001G473900 Sobic002G203000--Sobic007G057100 Sobic002G248100 Sobic002G248100 Sobic002G203000--Sobic002G248100 Sobic001G051600--Sobic001G489600 Sobic001G051600--Sobic001G476400 Sobic001G051600--Sobic006G095600 Sobic001G051600--Sobic002G203000 Sobic001G051600--Sobic007G057100 Sobic004G051166 Sobic004G051166 Sobic001G051600--Sobic004G051166 Sobic008G159100 Sobic008G159100 Sobic001G051600--Sobic008G159100 Sobic001G081600 Sobic001G081600 Sobic001G051600--Sobic001G081600 Sobic004G025000 Sobic004G025000 Sobic001G051600--Sobic004G025000 Sobic001G077700--Sobic009G071800 Sobic010G234600 Sobic010G234600 Sobic001G077700--Sobic010G234600 Sobic001G077700--Sobic002G203000 Sobic001G077700--Sobic002G248100 Sobic002G294700 Sobic002G294700 Sobic001G077700--Sobic002G294700 Sobic008G177800 Sobic008G177800 Sobic001G077700--Sobic008G177800 Sobic001G077700--Sobic004G286600 Sobic010G234700 Sobic010G234700 Sobic001G077700--Sobic010G234700 Sobic001G077700--Sobic001G489600 Sobic009G071800--Sobic001G077700 Sobic009G071800--Sobic002G203000 Sobic009G071800--Sobic010G234600 Sobic009G071800--Sobic002G248100 Sobic009G071800--Sobic002G294700 Sobic009G071800--Sobic010G076700 Sobic001G398500 Sobic001G398500 Sobic009G071800--Sobic001G398500 Sobic009G071800--Sobic001G473900 Sobic009G071800--Sobic006G095600 Sobic007G057100--Sobic001G489600 Sobic007G057100--Sobic002G203000 Sobic001G513700 Sobic001G513700 Sobic007G057100--Sobic001G513700 Sobic007G057100--Sobic006G095600 Sobic007G057100--Sobic004G286600 Sobic007G057100--Sobic001G077700 Sobic007G057100--Sobic001G051600 Sobic004G147900 Sobic004G147900 Sobic007G057100--Sobic004G147900 Sobic007G057100--Sobic001G473900 Sobic004G084100--Sobic006G095600 Sobic003G158600 Sobic003G158600 Sobic004G084100--Sobic003G158600 Sobic008G036000 Sobic008G036000 Sobic004G084100--Sobic008G036000 Sobic007G077001 Sobic007G077001 Sobic004G084100--Sobic007G077001 Sobic004G084100--Sobic001G489600 Sobic004G084100--Sobic002G203000 Sobic004G084100--Sobic001G077700 Sobic004G084100--Sobic009G071800 Sobic010G076600 Sobic010G076600 Sobic004G084100--Sobic010G076600 Sobic001G473900--Sobic001G476400 Sobic001G473900--Sobic010G076600 Sobic001G473900--Sobic002G203000 Sobic001G473900--Sobic009G071800 Sobic001G473900--Sobic001G077700 Sobic001G473900--Sobic006G095600 Sobic001G209800 Sobic001G209800 Sobic001G473900--Sobic001G209800 Sobic003G268700 Sobic003G268700 Sobic001G473900--Sobic003G268700 Sobic001G473900--Sobic002G248100 Sobic001G063600 Sobic001G063600 Sobic001G476400--Sobic001G063600 Sobic001G476400--Sobic001G051600 Sobic001G476400--Sobic001G473900 Sobic001G476400--Sobic010G076600 Sobic001G476400--Sobic001G081600 Sobic010G080400 Sobic010G080400 Sobic001G476400--Sobic010G080400 Sobic001G476400--Sobic006G095600 Sobic004G283300 Sobic004G283300 Sobic001G476400--Sobic004G283300 Sobic001G476400--Sobic001G489600
Octagon: transcription factors


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