Gene annotation
Transcriptome id Sobic.004G084100.1
Synonym Sb04g006920
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt A0A194YND6
Pfam -
Panther DB PTHR33564 PTHR33564:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G52565 : -
RAP-DB (Rice) LOC_Os06g40210.1 : expressed protein
MaizeGDB (Corn) Zm00025a019553 , Zm00025a034626
Brachypodium KQJ93912
Barley HORVU6Hr1G038250.2 , HORVU6Hr1G038250.3 , HORVU6Hr1G038250.1
Wheat TraesCS6B02G210400 , TraesCS6A02G181500
Populus -


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cDNA sequences
Sobic.004G084100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G095600 lipoxygenase (LOX) that catalyzes the first committed step of JA biosynthesis(PubMedID : 31597271)@lipoxygenase protein, putative, expressed K00454: lipoxygenase
2 Sobic.003G158600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@abscisic stress-ripening, putative, expressed -
3 Sobic.008G036000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
4 Sobic.007G077001 - -
5 Sobic.001G489600 expressed protein -
6 Sobic.002G203000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
7 Sobic.001G077700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.009G071800 6-phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
9 Sobic.010G076600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Serine/threonine-protein kinase RIPK(PubMedID : 31721651)@tyrosine protein kinase domain containing protein, putative, expressed -
10 Sobic.001G473900 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
11 Sobic.007G057100 expressed protein -
12 Sobic.002G118600 SNARE domain containing protein, putative, expressed K18211: synaptosomal-associated protein 25
13 Sobic.002G197600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-lg.2 - DUF26 kinases have homology to DUF26 containing loci, expressed -
14 Sobic.007G101800 pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed -
15 Sobic.001G462800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
16 Sobic.002G344700 remorin, putative, expressed -
17 Sobic.001G081600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
18 Sobic.001G482700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
19 Sobic.002G036100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed -
20 Sobic.001G290400 no apical meristem protein, putative, expressed -


Gene co-expression network
sample Sobic004G084100 Sobic004G084100 Sobic006G095600 Sobic006G095600 Sobic004G084100--Sobic006G095600 Sobic003G158600 Sobic003G158600 Sobic004G084100--Sobic003G158600 Sobic008G036000 Sobic008G036000 Sobic004G084100--Sobic008G036000 Sobic007G077001 Sobic007G077001 Sobic004G084100--Sobic007G077001 Sobic001G489600 Sobic001G489600 Sobic004G084100--Sobic001G489600 Sobic002G203000 Sobic002G203000 Sobic004G084100--Sobic002G203000 Sobic001G077700 Sobic001G077700 Sobic004G084100--Sobic001G077700 Sobic009G071800 Sobic009G071800 Sobic004G084100--Sobic009G071800 Sobic010G076600 Sobic010G076600 Sobic004G084100--Sobic010G076600 Sobic006G095600--Sobic001G489600 Sobic006G095600--Sobic002G203000 Sobic001G051600 Sobic001G051600 Sobic006G095600--Sobic001G051600 Sobic006G095600--Sobic001G077700 Sobic006G095600--Sobic009G071800 Sobic007G057100 Sobic007G057100 Sobic006G095600--Sobic007G057100 Sobic006G095600--Sobic004G084100 Sobic001G473900 Sobic001G473900 Sobic006G095600--Sobic001G473900 Sobic001G476400 Sobic001G476400 Sobic006G095600--Sobic001G476400 Sobic003G158600--Sobic004G084100 Sobic003G158600--Sobic008G036000 Sobic001G462800 Sobic001G462800 Sobic003G158600--Sobic001G462800 Sobic002G197600 Sobic002G197600 Sobic003G158600--Sobic002G197600 Sobic003G268700 Sobic003G268700 Sobic003G158600--Sobic003G268700 Sobic002G021300 Sobic002G021300 Sobic003G158600--Sobic002G021300 Sobic003G158600--Sobic007G077001 Sobic003G158600--Sobic006G095600 Sobic004G300300 Sobic004G300300 Sobic003G158600--Sobic004G300300 Sobic008G036000--Sobic002G197600 Sobic001G209800 Sobic001G209800 Sobic008G036000--Sobic001G209800 Sobic008G036000--Sobic003G268700 Sobic008G036000--Sobic010G076600 Sobic008G036000--Sobic003G158600 Sobic008G036000--Sobic001G462800 Sobic001G077400 Sobic001G077400 Sobic008G036000--Sobic001G077400 Sobic008G036000--Sobic004G084100 Sobic002G036100 Sobic002G036100 Sobic008G036000--Sobic002G036100 Sobic007G077001--Sobic006G095600 Sobic007G077001--Sobic001G077700 Sobic007G077001--Sobic009G071800 Sobic007G077001--Sobic002G036100 Sobic007G077001--Sobic004G084100 Sobic007G077001--Sobic001G489600 Sobic002G248100 Sobic002G248100 Sobic007G077001--Sobic002G248100 Sobic004G305000 Sobic004G305000 Sobic007G077001--Sobic004G305000 Sobic007G077001--Sobic008G036000 Sobic001G489600--Sobic001G051600 Sobic001G489600--Sobic006G095600 Sobic001G489600--Sobic001G077700 Sobic001G489600--Sobic002G203000 Sobic001G489600--Sobic007G057100 Sobic004G280900 Sobic004G280900 Sobic001G489600--Sobic004G280900 Sobic001G489600--Sobic001G476400 Sobic001G489600--Sobic009G071800 Sobic004G286600 Sobic004G286600 Sobic001G489600--Sobic004G286600 Sobic002G203000--Sobic001G077700 Sobic002G203000--Sobic009G071800 Sobic002G203000--Sobic006G095600 Sobic002G203000--Sobic001G489600 Sobic010G076700 Sobic010G076700 Sobic002G203000--Sobic010G076700 Sobic009G258300 Sobic009G258300 Sobic002G203000--Sobic009G258300 Sobic002G203000--Sobic001G473900 Sobic002G203000--Sobic007G057100 Sobic002G203000--Sobic002G248100 Sobic001G077700--Sobic009G071800 Sobic010G234600 Sobic010G234600 Sobic001G077700--Sobic010G234600 Sobic001G077700--Sobic002G203000 Sobic001G077700--Sobic002G248100 Sobic002G294700 Sobic002G294700 Sobic001G077700--Sobic002G294700 Sobic008G177800 Sobic008G177800 Sobic001G077700--Sobic008G177800 Sobic001G077700--Sobic004G286600 Sobic010G234700 Sobic010G234700 Sobic001G077700--Sobic010G234700 Sobic001G077700--Sobic001G489600 Sobic009G071800--Sobic001G077700 Sobic009G071800--Sobic002G203000 Sobic009G071800--Sobic010G234600 Sobic009G071800--Sobic002G248100 Sobic009G071800--Sobic002G294700 Sobic009G071800--Sobic010G076700 Sobic001G398500 Sobic001G398500 Sobic009G071800--Sobic001G398500 Sobic009G071800--Sobic001G473900 Sobic009G071800--Sobic006G095600 Sobic006G184400 Sobic006G184400 Sobic010G076600--Sobic006G184400 Sobic010G076600--Sobic001G209800 Sobic010G076600--Sobic001G476400 Sobic010G076600--Sobic001G473900 Sobic009G217600 Sobic009G217600 Sobic010G076600--Sobic009G217600 Sobic003G338900 Sobic003G338900 Sobic010G076600--Sobic003G338900 Sobic010G076600--Sobic008G036000 Sobic010G076600--Sobic006G095600 Sobic003G296700 Sobic003G296700 Sobic010G076600--Sobic003G296700
Octagon: transcription factors


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