Gene annotation
Transcriptome id Sobic.001G462800.1
Synonym Sb01g043430
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
protein phosphatase 2C, putative, expressed
UniProt C5WTQ7
Pfam PF00481
Panther DB PTHR13832 PTHR13832:SF361
NCBI CDD KOG0700; Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase
KEGG Orthology -
Gene Ontology GO:0003824; catalytic activity GO:0006470protein dephosphorylation GO:0004722protein serine/threonine phosphatase activity


Orthologs (automatic annotation)
TAIR AT4G33920 : Protein phosphatase 2C family protein
RAP-DB (Rice) LOC_Os03g10950.1 : protein phosphatase 2C, putative, expressed
MaizeGDB (Corn) Zm00025a053127
Brachypodium KQK23007
Barley HORVU4Hr1G069380.4 , HORVU4Hr1G069380.1 , HORVU4Hr1G069380.3
Wheat TraesCS4A02G050000 , TraesCS4B02G254700 , TraesCS4D02G254500
Populus -


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cDNA sequences
Sobic.001G462800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G081600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
2 Sobic.002G217100 tyrosine protein kinase domain containing protein, putative, expressed -
3 Sobic.002G294600 aspartic proteinase nepenthesin precursor, putative, expressed -
4 Sobic.002G197600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-lg.2 - DUF26 kinases have homology to DUF26 containing loci, expressed -
5 Sobic.002G344700 remorin, putative, expressed -
6 Sobic.002G367900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aspartic proteinase nepenthesin precursor, putative, expressed -
7 Sobic.006G210300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
8 Sobic.007G145700 expressed protein -
9 Sobic.004G281200 chitin-inducible gibberellin-responsive protein 2, putative, expressed -
10 Sobic.002G401600 glycosyltransferase, putative, expressed -
11 Sobic.008G036000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
12 Sobic.010G016500 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@ Relatively high abundance in cold tolerant sorghum under cold stress(PubMedID : 26645959)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@key regulator in cold signaling pathway (Arabidopsis)(PubMedID : 16244905)@dehydration-responsive element-binding protein, putative, expressed -
13 Sobic.010G272000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@leucine zipper protein-like, putative, expressed -
14 Sobic.004G283300 AP2 domain containing protein, expressed -
15 Sobic.004G065900 CML (Calmodulin like protein) with WRKY-binding domain(PubMedID : 31721651)@transcription factor(PubMedID : 30367619)@WRKY71, expressed -
16 Sobic.007G051800 down-regulated TF in developmental senescence(PubMedID : 27586543)@basic helix-loop-helix family protein, putative, expressed -
17 Sobic.003G131500 VQ domain containing protein, putative, expressed -
18 Sobic.008G059000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
19 Sobic.001G095700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@helix-loop-helix DNA-binding domain containing protein, expressed -
20 Sobic.004G244300 formin-like protein 3 precursor, putative, expressed -


Gene co-expression network
sample Sobic001G462800 Sobic001G462800 Sobic001G081600 Sobic001G081600 Sobic001G462800--Sobic001G081600 Sobic002G217100 Sobic002G217100 Sobic001G462800--Sobic002G217100 Sobic002G294600 Sobic002G294600 Sobic001G462800--Sobic002G294600 Sobic002G197600 Sobic002G197600 Sobic001G462800--Sobic002G197600 Sobic002G344700 Sobic002G344700 Sobic001G462800--Sobic002G344700 Sobic002G367900 Sobic002G367900 Sobic001G462800--Sobic002G367900 Sobic006G210300 Sobic006G210300 Sobic001G462800--Sobic006G210300 Sobic007G145700 Sobic007G145700 Sobic001G462800--Sobic007G145700 Sobic004G281200 Sobic004G281200 Sobic001G462800--Sobic004G281200 Sobic001G081600--Sobic001G462800 Sobic001G081600--Sobic002G217100 Sobic001G081600--Sobic006G210300 Sobic004G283300 Sobic004G283300 Sobic001G081600--Sobic004G283300 Sobic001G081600--Sobic002G197600 Sobic001G081600--Sobic004G281200 Sobic001G081600--Sobic002G344700 Sobic004G025000 Sobic004G025000 Sobic001G081600--Sobic004G025000 Sobic001G476400 Sobic001G476400 Sobic001G081600--Sobic001G476400 Sobic002G217100--Sobic006G210300 Sobic002G217100--Sobic001G081600 Sobic002G217100--Sobic001G462800 Sobic002G217100--Sobic004G281200 Sobic002G217100--Sobic002G197600 Sobic010G016500 Sobic010G016500 Sobic002G217100--Sobic010G016500 Sobic004G244300 Sobic004G244300 Sobic002G217100--Sobic004G244300 Sobic009G167000 Sobic009G167000 Sobic002G217100--Sobic009G167000 Sobic004G244100 Sobic004G244100 Sobic002G217100--Sobic004G244100 Sobic002G294600--Sobic007G145700 Sobic002G294600--Sobic001G462800 Sobic001G095700 Sobic001G095700 Sobic002G294600--Sobic001G095700 Sobic002G294600--Sobic002G367900 Sobic004G065900 Sobic004G065900 Sobic002G294600--Sobic004G065900 Sobic002G294600--Sobic002G217100 Sobic003G341100 Sobic003G341100 Sobic002G294600--Sobic003G341100 Sobic006G146500 Sobic006G146500 Sobic002G294600--Sobic006G146500 Sobic001G118900 Sobic001G118900 Sobic002G294600--Sobic001G118900 Sobic002G197600--Sobic001G081600 Sobic002G197600--Sobic002G217100 Sobic002G197600--Sobic001G462800 Sobic002G197600--Sobic004G281200 Sobic002G197600--Sobic006G210300 Sobic002G197600--Sobic002G367900 Sobic008G036000 Sobic008G036000 Sobic002G197600--Sobic008G036000 Sobic002G197600--Sobic004G244100 Sobic004G176900 Sobic004G176900 Sobic002G197600--Sobic004G176900 Sobic002G344700--Sobic004G283300 Sobic002G344700--Sobic001G081600 Sobic002G344700--Sobic001G462800 Sobic006G032200 Sobic006G032200 Sobic002G344700--Sobic006G032200 Sobic002G344700--Sobic004G025000 Sobic009G170100 Sobic009G170100 Sobic002G344700--Sobic009G170100 Sobic002G344700--Sobic004G281200 Sobic002G344700--Sobic006G210300 Sobic002G344700--Sobic002G217100 Sobic002G207300 Sobic002G207300 Sobic002G367900--Sobic002G207300 Sobic002G367900--Sobic004G065900 Sobic003G268900 Sobic003G268900 Sobic002G367900--Sobic003G268900 Sobic002G367900--Sobic001G095700 Sobic002G367900--Sobic001G462800 Sobic002G367900--Sobic002G294600 Sobic002G367900--Sobic002G197600 Sobic002G367900--Sobic006G210300 Sobic002G367900--Sobic004G244100 Sobic006G210300--Sobic002G217100 Sobic006G210300--Sobic004G281200 Sobic006G210300--Sobic001G081600 Sobic006G210300--Sobic002G197600 Sobic006G210300--Sobic001G462800 Sobic006G210300--Sobic002G367900 Sobic006G210300--Sobic010G016500 Sobic006G210300--Sobic004G244100 Sobic006G184400 Sobic006G184400 Sobic006G210300--Sobic006G184400 Sobic007G145700--Sobic003G341100 Sobic007G145700--Sobic002G294600 Sobic010G102000 Sobic010G102000 Sobic007G145700--Sobic010G102000 Sobic007G145700--Sobic001G462800 Sobic007G145700--Sobic006G146500 Sobic009G217500 Sobic009G217500 Sobic007G145700--Sobic009G217500 Sobic007G145700--Sobic001G095700 Sobic009G044400 Sobic009G044400 Sobic007G145700--Sobic009G044400 Sobic006G273800 Sobic006G273800 Sobic007G145700--Sobic006G273800 Sobic004G281200--Sobic010G016500 Sobic004G281200--Sobic004G244300 Sobic008G059000 Sobic008G059000 Sobic004G281200--Sobic008G059000 Sobic006G194600 Sobic006G194600 Sobic004G281200--Sobic006G194600 Sobic006G203000 Sobic006G203000 Sobic004G281200--Sobic006G203000 Sobic004G281200--Sobic002G217100 Sobic004G281200--Sobic006G210300 Sobic004G281200--Sobic001G081600 Sobic004G281200--Sobic004G244100
Octagon: transcription factors


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