Gene annotation
Transcriptome id Sobic.004G065900.1
Synonym SORBI_3004G065900 , ATWRKY40, Sb04g005520, WRKY40, WRKY40, SORBIDRAFT_04g005520;AtWRKY40 ortholog
Functional annotation CML (Calmodulin like protein) with WRKY-binding domain (PubMedID : 31721651)
transcription factor (PubMedID : 30367619)
WRKY71, expressed
UniProt C5XWV9
Pfam PF03106
Panther DB PTHR31429:SF9 PTHR31429
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003700; DNA-binding transcription factor activity GO:0006355regulation of transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT1G80840 : WRKY DNA-binding protein 40
RAP-DB (Rice) LOC_Os02g08440.1 : WRKY71, expressed
MaizeGDB (Corn) Zm00025a019231 , Zm00025a042053 , Zm00025a034743
Brachypodium KQJ93670 , KQK16829
Barley HORVU6Hr1G028790.2 , HORVU6Hr1G028790.3 , HORVU6Hr1G028790.1 , HORVU7Hr1G113850.4 , HORVU7Hr1G113850.1 , HORVU7Hr1G113850.3 , HORVU7Hr1G113850.2 , HORVU7Hr1G113830.3 , HORVU7Hr1G113830.2 , HORVU7Hr1G113830.1 , HORVU7Hr1G113830.4
Wheat TraesCS6A02G146900 , TraesCS6B02G175100 , TraesCS6B02G175100 , TraesCS7D02G497700 , TraesCS7B02G419400 , TraesCS7A02G509000 , TraesCS7A02G508700 , TraesCS7B02G418600 , TraesCS6D02G136200 , TraesCS6D02G136200 , TraesCS7D02G497400 , TraesCS7D02G497400 , TraesCS7B02G418400 , TraesCS7D02G497300 , TraesCS7D02G497300 , TraesCS7A02G508800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G207300 tetraspanin family protein, putative, expressed -
2 Sobic.001G095700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@helix-loop-helix DNA-binding domain containing protein, expressed -
3 Sobic.002G367900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aspartic proteinase nepenthesin precursor, putative, expressed -
4 Sobic.001G118900 DUF292 domain containing protein, expressed -
5 Sobic.002G294600 aspartic proteinase nepenthesin precursor, putative, expressed -
6 Sobic.006G146500 NB-ARC/LRR disease resistance protein, putative, expressed K13459: disease resistance protein RPS2
7 Sobic.007G201100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxysterol-binding protein, putative, expressed -
8 Sobic.007G145700 expressed protein -
9 Sobic.009G010400 zinc finger, RING-type, putative, expressed -
10 Sobic.001G462800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
11 Sobic.004G086800 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
12 Sobic.006G210300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
13 Sobic.003G425200 Calmodulin-like protein 1(PubMedID : 24906815)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@calmodulin-like protein 1, putative, expressed K13448: calcium-binding protein CML
14 Sobic.003G341100 WRKY24, expressed K13424: WRKY transcription factor 33
15 Sobic.009G100500 WRKY53, expressed K13424: WRKY transcription factor 33
16 Sobic.001G287600 transcription factor MYC7E, putative, expressed K13422: transcription factor MYC2
17 Sobic.003G268900 STE_MEKK_ste11_MAP3K.6 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
18 Sobic.002G418900 expressed protein -
19 Sobic.007G051800 down-regulated TF in developmental senescence(PubMedID : 27586543)@basic helix-loop-helix family protein, putative, expressed -
20 Sobic.002G185200 VQ domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic004G065900 Sobic004G065900 Sobic002G207300 Sobic002G207300 Sobic004G065900--Sobic002G207300 Sobic001G095700 Sobic001G095700 Sobic004G065900--Sobic001G095700 Sobic002G367900 Sobic002G367900 Sobic004G065900--Sobic002G367900 Sobic001G118900 Sobic001G118900 Sobic004G065900--Sobic001G118900 Sobic002G294600 Sobic002G294600 Sobic004G065900--Sobic002G294600 Sobic006G146500 Sobic006G146500 Sobic004G065900--Sobic006G146500 Sobic007G201100 Sobic007G201100 Sobic004G065900--Sobic007G201100 Sobic007G145700 Sobic007G145700 Sobic004G065900--Sobic007G145700 Sobic009G010400 Sobic009G010400 Sobic004G065900--Sobic009G010400 Sobic002G207300--Sobic004G065900 Sobic002G207300--Sobic002G367900 Sobic002G207300--Sobic007G201100 Sobic002G207300--Sobic006G146500 Sobic002G207300--Sobic001G118900 Sobic003G425200 Sobic003G425200 Sobic002G207300--Sobic003G425200 Sobic002G207300--Sobic002G294600 Sobic001G410100 Sobic001G410100 Sobic002G207300--Sobic001G410100 Sobic002G207300--Sobic001G095700 Sobic001G095700--Sobic004G065900 Sobic003G268900 Sobic003G268900 Sobic001G095700--Sobic003G268900 Sobic001G095700--Sobic002G294600 Sobic001G095700--Sobic002G367900 Sobic001G095700--Sobic007G145700 Sobic006G273800 Sobic006G273800 Sobic001G095700--Sobic006G273800 Sobic007G051800 Sobic007G051800 Sobic001G095700--Sobic007G051800 Sobic001G064900 Sobic001G064900 Sobic001G095700--Sobic001G064900 Sobic003G341100 Sobic003G341100 Sobic001G095700--Sobic003G341100 Sobic002G367900--Sobic002G207300 Sobic002G367900--Sobic004G065900 Sobic002G367900--Sobic003G268900 Sobic002G367900--Sobic001G095700 Sobic001G462800 Sobic001G462800 Sobic002G367900--Sobic001G462800 Sobic002G367900--Sobic002G294600 Sobic002G197600 Sobic002G197600 Sobic002G367900--Sobic002G197600 Sobic006G210300 Sobic006G210300 Sobic002G367900--Sobic006G210300 Sobic004G244100 Sobic004G244100 Sobic002G367900--Sobic004G244100 Sobic001G118900--Sobic004G065900 Sobic001G161200 Sobic001G161200 Sobic001G118900--Sobic001G161200 Sobic001G118900--Sobic002G367900 Sobic001G118900--Sobic002G207300 Sobic004G006500 Sobic004G006500 Sobic001G118900--Sobic004G006500 Sobic001G118900--Sobic002G294600 Sobic002G418900 Sobic002G418900 Sobic001G118900--Sobic002G418900 Sobic001G095750 Sobic001G095750 Sobic001G118900--Sobic001G095750 Sobic001G118900--Sobic001G462800 Sobic002G294600--Sobic007G145700 Sobic002G294600--Sobic001G462800 Sobic002G294600--Sobic001G095700 Sobic002G294600--Sobic002G367900 Sobic002G294600--Sobic004G065900 Sobic002G217100 Sobic002G217100 Sobic002G294600--Sobic002G217100 Sobic002G294600--Sobic003G341100 Sobic002G294600--Sobic006G146500 Sobic002G294600--Sobic001G118900 Sobic006G146500--Sobic003G425200 Sobic006G146500--Sobic004G065900 Sobic006G146500--Sobic007G145700 Sobic006G146500--Sobic003G341100 Sobic006G146500--Sobic002G207300 Sobic006G146500--Sobic002G294600 Sobic006G146500--Sobic007G201100 Sobic006G146500--Sobic002G367900 Sobic001G081600 Sobic001G081600 Sobic006G146500--Sobic001G081600 Sobic007G201100--Sobic002G207300 Sobic007G201100--Sobic004G065900 Sobic007G201100--Sobic003G425200 Sobic007G201100--Sobic003G341100 Sobic007G077100 Sobic007G077100 Sobic007G201100--Sobic007G077100 Sobic009G217500 Sobic009G217500 Sobic007G201100--Sobic009G217500 Sobic007G201100--Sobic006G146500 Sobic007G201100--Sobic002G367900 Sobic007G201100--Sobic007G145700 Sobic007G145700--Sobic003G341100 Sobic007G145700--Sobic002G294600 Sobic010G102000 Sobic010G102000 Sobic007G145700--Sobic010G102000 Sobic007G145700--Sobic001G462800 Sobic007G145700--Sobic006G146500 Sobic007G145700--Sobic009G217500 Sobic007G145700--Sobic001G095700 Sobic009G044400 Sobic009G044400 Sobic007G145700--Sobic009G044400 Sobic007G145700--Sobic006G273800 Sobic004G086800 Sobic004G086800 Sobic009G010400--Sobic004G086800 Sobic009G010400--Sobic004G065900 Sobic009G010400--Sobic001G064900 Sobic009G100500 Sobic009G100500 Sobic009G010400--Sobic009G100500 Sobic006G257700 Sobic006G257700 Sobic009G010400--Sobic006G257700 Sobic006G259000 Sobic006G259000 Sobic009G010400--Sobic006G259000 Sobic009G010400--Sobic001G095700 Sobic009G010400--Sobic010G102000 Sobic009G010400--Sobic004G006500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.