Gene annotation
Transcriptome id Sobic.009G010400.1
Synonym RHC2A, Sb09g001100
Functional annotation zinc finger, RING-type, putative, expressed
UniProt C5YYG0
Pfam PF13639 PF14369 PF06547
Panther DB PTHR22763 PTHR22763:SF42
NCBI CDD KOG1493; Anaphase-promoting complex (APC), subunit 11
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT2G39720 : RING-H2 finger C2A
RAP-DB (Rice) LOC_Os05g01940.1 : zinc finger, RING-type, putative, expressed
MaizeGDB (Corn) Zm00025a038274 , Zm00025a040955
Brachypodium -
Barley HORVU1Hr1G004330.2 , HORVU1Hr1G004330.5 , HORVU1Hr1G004330.4 , HORVU1Hr1G004330.7 , HORVU1Hr1G004330.6 , HORVU2Hr1G057850.3 , HORVU2Hr1G057850.2 , HORVU2Hr1G057850.1 , HORVU2Hr1G057850.4 , HORVU4Hr1G077870.1 , HORVU3Hr1G041030.3 , HORVU3Hr1G041030.2 , HORVU3Hr1G041030.1 , HORVU6Hr1G068250.1 , HORVU7Hr1G055010.1 , HORVU7Hr1G055010.2 , HORVU7Hr1G055010.3 , HORVU1Hr1G004330.13 , HORVU1Hr1G004330.15 , HORVU1Hr1G004330.14 , HORVU1Hr1G004330.11 , HORVU1Hr1G004330.10 , HORVU4Hr1G073950.2 , HORVU4Hr1G073950.3 , HORVU4Hr1G073950.1 , HORVU3Hr1G115000.4 , HORVU3Hr1G115000.5 , HORVU3Hr1G115000.6 , HORVU3Hr1G115000.7 , HORVU3Hr1G115000.1 , HORVU3Hr1G115000.2 , HORVU3Hr1G115000.3
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G086800 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
2 Sobic.004G065900 CML (Calmodulin like protein) with WRKY-binding domain(PubMedID : 31721651)@transcription factor(PubMedID : 30367619)@WRKY71, expressed -
3 Sobic.001G064900 syntaxin, putative, expressed K08486: syntaxin 1B/2/3
4 Sobic.009G100500 WRKY53, expressed K13424: WRKY transcription factor 33
5 Sobic.006G257700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heavy metal transport/detoxification protein, putative, expressed -
6 Sobic.006G259000 AP2 domain containing protein, expressed K09286: EREBP-like factor
7 Sobic.001G095700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@helix-loop-helix DNA-binding domain containing protein, expressed -
8 Sobic.010G102000 U-box protein CMPG1, putative, expressed -
9 Sobic.004G006500 expressed protein -
10 Sobic.004G169900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@U-box domain containing protein, expressed -
11 Sobic.002G341900 - -
12 Sobic.002G294600 aspartic proteinase nepenthesin precursor, putative, expressed -
13 Sobic.003G193800 calmodulin-binding protein, putative, expressed -
14 Sobic.002G199500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CaM - probable calciumbinding protein CML45(PubMedID : 31721651)@EF hand family protein, putative, expressed K02183: calmodulin
15 Sobic.002G207300 tetraspanin family protein, putative, expressed -
16 Sobic.007G090300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.002G323900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PRAS-rich protein, putative, expressed -
18 Sobic.001G287600 transcription factor MYC7E, putative, expressed K13422: transcription factor MYC2
19 Sobic.002G138700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@C2 domain containing protein, putative, expressed -
20 Sobic.007G145700 expressed protein -


Gene co-expression network
sample Sobic009G010400 Sobic009G010400 Sobic004G086800 Sobic004G086800 Sobic009G010400--Sobic004G086800 Sobic004G065900 Sobic004G065900 Sobic009G010400--Sobic004G065900 Sobic001G064900 Sobic001G064900 Sobic009G010400--Sobic001G064900 Sobic009G100500 Sobic009G100500 Sobic009G010400--Sobic009G100500 Sobic006G257700 Sobic006G257700 Sobic009G010400--Sobic006G257700 Sobic006G259000 Sobic006G259000 Sobic009G010400--Sobic006G259000 Sobic001G095700 Sobic001G095700 Sobic009G010400--Sobic001G095700 Sobic010G102000 Sobic010G102000 Sobic009G010400--Sobic010G102000 Sobic004G006500 Sobic004G006500 Sobic009G010400--Sobic004G006500 Sobic004G086800--Sobic009G010400 Sobic003G416500 Sobic003G416500 Sobic004G086800--Sobic003G416500 Sobic004G086800--Sobic006G259000 Sobic004G086800--Sobic004G065900 Sobic002G323900 Sobic002G323900 Sobic004G086800--Sobic002G323900 Sobic001G489500 Sobic001G489500 Sobic004G086800--Sobic001G489500 Sobic004G086800--Sobic010G102000 Sobic002G138700 Sobic002G138700 Sobic004G086800--Sobic002G138700 Sobic001G287600 Sobic001G287600 Sobic004G086800--Sobic001G287600 Sobic002G207300 Sobic002G207300 Sobic004G065900--Sobic002G207300 Sobic004G065900--Sobic001G095700 Sobic002G367900 Sobic002G367900 Sobic004G065900--Sobic002G367900 Sobic001G118900 Sobic001G118900 Sobic004G065900--Sobic001G118900 Sobic002G294600 Sobic002G294600 Sobic004G065900--Sobic002G294600 Sobic006G146500 Sobic006G146500 Sobic004G065900--Sobic006G146500 Sobic007G201100 Sobic007G201100 Sobic004G065900--Sobic007G201100 Sobic007G145700 Sobic007G145700 Sobic004G065900--Sobic007G145700 Sobic004G065900--Sobic009G010400 Sobic001G064900--Sobic010G102000 Sobic009G217500 Sobic009G217500 Sobic001G064900--Sobic009G217500 Sobic006G273800 Sobic006G273800 Sobic001G064900--Sobic006G273800 Sobic010G023200 Sobic010G023200 Sobic001G064900--Sobic010G023200 Sobic001G064900--Sobic006G257700 Sobic001G064900--Sobic006G259000 Sobic007G077100 Sobic007G077100 Sobic001G064900--Sobic007G077100 Sobic001G064900--Sobic001G095700 Sobic003G341100 Sobic003G341100 Sobic001G064900--Sobic003G341100 Sobic003G193800 Sobic003G193800 Sobic009G100500--Sobic003G193800 Sobic009G100500--Sobic009G010400 Sobic007G090300 Sobic007G090300 Sobic009G100500--Sobic007G090300 Sobic010G221032 Sobic010G221032 Sobic009G100500--Sobic010G221032 Sobic009G100500--Sobic004G065900 Sobic001G410100 Sobic001G410100 Sobic009G100500--Sobic001G410100 Sobic002G199500 Sobic002G199500 Sobic009G100500--Sobic002G199500 Sobic009G100500--Sobic002G207300 Sobic009G100500--Sobic006G259000 Sobic006G257700--Sobic001G064900 Sobic006G257700--Sobic009G010400 Sobic006G257700--Sobic010G102000 Sobic004G297600 Sobic004G297600 Sobic006G257700--Sobic004G297600 Sobic006G257700--Sobic001G095700 Sobic006G257700--Sobic001G287600 Sobic006G257700--Sobic010G023200 Sobic007G077300 Sobic007G077300 Sobic006G257700--Sobic007G077300 Sobic006G257700--Sobic006G259000 Sobic006G259000--Sobic003G416500 Sobic006G259000--Sobic002G323900 Sobic006G259000--Sobic010G023200 Sobic006G259000--Sobic007G077100 Sobic010G105300 Sobic010G105300 Sobic006G259000--Sobic010G105300 Sobic006G259000--Sobic001G064900 Sobic006G259000--Sobic001G489500 Sobic006G259000--Sobic004G086800 Sobic006G259000--Sobic009G217500 Sobic001G095700--Sobic004G065900 Sobic003G268900 Sobic003G268900 Sobic001G095700--Sobic003G268900 Sobic001G095700--Sobic002G294600 Sobic001G095700--Sobic002G367900 Sobic001G095700--Sobic007G145700 Sobic001G095700--Sobic006G273800 Sobic007G051800 Sobic007G051800 Sobic001G095700--Sobic007G051800 Sobic001G095700--Sobic001G064900 Sobic001G095700--Sobic003G341100 Sobic010G102000--Sobic009G217500 Sobic010G102000--Sobic010G105300 Sobic010G102000--Sobic003G341100 Sobic002G232800 Sobic002G232800 Sobic010G102000--Sobic002G232800 Sobic010G102000--Sobic001G064900 Sobic010G102000--Sobic007G145700 Sobic010G102000--Sobic010G023200 Sobic010G102000--Sobic007G077100 Sobic010G102000--Sobic006G273800 Sobic002G185200 Sobic002G185200 Sobic004G006500--Sobic002G185200 Sobic002G418900 Sobic002G418900 Sobic004G006500--Sobic002G418900 Sobic004G006500--Sobic001G118900 Sobic004G006500--Sobic009G010400 Sobic009G028500 Sobic009G028500 Sobic004G006500--Sobic009G028500 Sobic004G006500--Sobic004G065900 Sobic002G195800 Sobic002G195800 Sobic004G006500--Sobic002G195800 Sobic006G114200 Sobic006G114200 Sobic004G006500--Sobic006G114200 Sobic004G006500--Sobic004G086800
Octagon: transcription factors


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