Gene annotation
Transcriptome id Sobic.006G259000.1
Synonym ATERF3, ERF3
Functional annotation AP2 domain containing protein, expressed
UniProt A0A1Z5RG23
Pfam PF00847
Panther DB PTHR31677 PTHR31677:SF20
NCBI CDD -
KEGG Orthology K09286; EREBP-like factor
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT3G15210 : ethylene responsive element binding factor 4
RAP-DB (Rice) LOC_Os04g57340.1 : AP2 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a049596 , Zm00025a057002 , Zm00025a009843 , Zm00025a049497
Brachypodium KQK17300 , KQK02618 , KQK02619 , PNT61818 , KQK19045 , PNT62098 , KQJ83714
Barley HORVU4Hr1G082030.3 , HORVU4Hr1G082030.2 , HORVU4Hr1G082030.5 , HORVU4Hr1G082030.4
Wheat -
Populus -


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cDNA sequences
Sobic.006G259000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G416500 SRC2 protein, putative, expressed -
2 Sobic.002G323900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PRAS-rich protein, putative, expressed -
3 Sobic.010G023200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.007G077100 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
5 Sobic.010G105300 hydrolase, NUDIX family, domain containing protein, expressed K07766: diphosphoinositol-polyphosphate diphosphatase
6 Sobic.001G064900 syntaxin, putative, expressed K08486: syntaxin 1B/2/3
7 Sobic.001G489500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.004G086800 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
9 Sobic.009G217500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_MEKK_ste11_MAP3K.18 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
10 Sobic.010G102000 U-box protein CMPG1, putative, expressed -
11 Sobic.002G138700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@C2 domain containing protein, putative, expressed -
12 Sobic.007G090300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.009G010400 zinc finger, RING-type, putative, expressed -
14 Sobic.007G118301 - -
15 Sobic.007G201100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxysterol-binding protein, putative, expressed -
16 Sobic.006G273800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
17 Sobic.010G071000 zinc finger, C3HC4 type domain containing protein, expressed -
18 Sobic.009G100500 WRKY53, expressed K13424: WRKY transcription factor 33
19 Sobic.003G341100 WRKY24, expressed K13424: WRKY transcription factor 33
20 Sobic.001G410100 CGMC_MAPKCGMC_2_ERK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3


Gene co-expression network
sample Sobic006G259000 Sobic006G259000 Sobic003G416500 Sobic003G416500 Sobic006G259000--Sobic003G416500 Sobic002G323900 Sobic002G323900 Sobic006G259000--Sobic002G323900 Sobic010G023200 Sobic010G023200 Sobic006G259000--Sobic010G023200 Sobic007G077100 Sobic007G077100 Sobic006G259000--Sobic007G077100 Sobic010G105300 Sobic010G105300 Sobic006G259000--Sobic010G105300 Sobic001G064900 Sobic001G064900 Sobic006G259000--Sobic001G064900 Sobic001G489500 Sobic001G489500 Sobic006G259000--Sobic001G489500 Sobic004G086800 Sobic004G086800 Sobic006G259000--Sobic004G086800 Sobic009G217500 Sobic009G217500 Sobic006G259000--Sobic009G217500 Sobic003G416500--Sobic001G489500 Sobic003G416500--Sobic010G023200 Sobic003G416500--Sobic006G259000 Sobic003G416500--Sobic007G077100 Sobic003G416500--Sobic009G217500 Sobic006G273800 Sobic006G273800 Sobic003G416500--Sobic006G273800 Sobic009G120800 Sobic009G120800 Sobic003G416500--Sobic009G120800 Sobic003G416500--Sobic002G323900 Sobic003G416500--Sobic010G105300 Sobic002G323900--Sobic006G259000 Sobic002G323900--Sobic003G416500 Sobic002G323900--Sobic007G077100 Sobic002G323900--Sobic001G489500 Sobic002G323900--Sobic010G023200 Sobic002G323900--Sobic004G086800 Sobic002G269300 Sobic002G269300 Sobic002G323900--Sobic002G269300 Sobic002G323900--Sobic001G064900 Sobic009G010400 Sobic009G010400 Sobic002G323900--Sobic009G010400 Sobic010G023200--Sobic007G077100 Sobic010G023200--Sobic009G217500 Sobic010G023200--Sobic003G416500 Sobic010G023200--Sobic006G273800 Sobic010G023200--Sobic006G259000 Sobic010G071000 Sobic010G071000 Sobic010G023200--Sobic010G071000 Sobic003G341100 Sobic003G341100 Sobic010G023200--Sobic003G341100 Sobic010G023200--Sobic001G064900 Sobic010G023200--Sobic001G489500 Sobic007G077100--Sobic010G023200 Sobic007G077100--Sobic009G217500 Sobic007G077100--Sobic006G273800 Sobic007G077100--Sobic003G416500 Sobic007G077100--Sobic003G341100 Sobic007G077100--Sobic006G259000 Sobic007G077200 Sobic007G077200 Sobic007G077100--Sobic007G077200 Sobic007G077100--Sobic010G071000 Sobic007G077100--Sobic001G489500 Sobic010G102000 Sobic010G102000 Sobic010G105300--Sobic010G102000 Sobic010G105300--Sobic006G259000 Sobic010G105300--Sobic003G416500 Sobic010G105300--Sobic010G023200 Sobic010G105300--Sobic009G217500 Sobic010G105300--Sobic007G077100 Sobic010G105300--Sobic001G489500 Sobic010G105300--Sobic001G064900 Sobic002G341900 Sobic002G341900 Sobic010G105300--Sobic002G341900 Sobic001G064900--Sobic010G102000 Sobic001G064900--Sobic009G217500 Sobic001G064900--Sobic006G273800 Sobic001G064900--Sobic010G023200 Sobic006G257700 Sobic006G257700 Sobic001G064900--Sobic006G257700 Sobic001G064900--Sobic006G259000 Sobic001G064900--Sobic007G077100 Sobic001G095700 Sobic001G095700 Sobic001G064900--Sobic001G095700 Sobic001G064900--Sobic003G341100 Sobic001G489500--Sobic003G416500 Sobic001G489500--Sobic010G023200 Sobic001G489500--Sobic009G217500 Sobic001G489500--Sobic006G273800 Sobic001G489500--Sobic007G077100 Sobic001G489500--Sobic006G259000 Sobic001G489500--Sobic009G120800 Sobic003G353800 Sobic003G353800 Sobic001G489500--Sobic003G353800 Sobic001G489500--Sobic002G323900 Sobic004G086800--Sobic009G010400 Sobic004G086800--Sobic003G416500 Sobic004G086800--Sobic006G259000 Sobic004G065900 Sobic004G065900 Sobic004G086800--Sobic004G065900 Sobic004G086800--Sobic002G323900 Sobic004G086800--Sobic001G489500 Sobic004G086800--Sobic010G102000 Sobic002G138700 Sobic002G138700 Sobic004G086800--Sobic002G138700 Sobic001G287600 Sobic001G287600 Sobic004G086800--Sobic001G287600 Sobic009G217500--Sobic006G273800 Sobic009G217500--Sobic007G077100 Sobic009G217500--Sobic003G341100 Sobic009G217500--Sobic010G023200 Sobic009G217500--Sobic010G102000 Sobic009G217500--Sobic003G416500 Sobic001G341600 Sobic001G341600 Sobic009G217500--Sobic001G341600 Sobic001G035000 Sobic001G035000 Sobic009G217500--Sobic001G035000 Sobic009G217500--Sobic001G064900
Octagon: transcription factors


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