Gene annotation
Transcriptome id Sobic.010G102000.1
Synonym Sb10g008890
Functional annotation U-box protein CMPG1, putative, expressed
UniProt A0A194YIA5
Pfam PF04564
Panther DB PTHR22849 PTHR22849:SF16
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016567; protein ubiquitination GO:0004842ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT5G37490 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os06g13870.1 : U-box protein CMPG1, putative, expressed
MaizeGDB (Corn) Zm00025a021970 , Zm00025a049380
Brachypodium KQK18739 , KQK22640
Barley HORVU6Hr1G077120.1 , HORVU6Hr1G077120.2 , HORVU7Hr1G040790.1 , HORVU4Hr1G064070.1 , HORVU7Hr1G040790.2
Wheat TraesCS5A02G088600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G217500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_MEKK_ste11_MAP3K.18 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
2 Sobic.010G105300 hydrolase, NUDIX family, domain containing protein, expressed K07766: diphosphoinositol-polyphosphate diphosphatase
3 Sobic.003G341100 WRKY24, expressed K13424: WRKY transcription factor 33
4 Sobic.002G232800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed K10664: E3 ubiquitin-protein ligase ATL6/9/15/31/42/55
5 Sobic.001G064900 syntaxin, putative, expressed K08486: syntaxin 1B/2/3
6 Sobic.007G145700 expressed protein -
7 Sobic.010G023200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.007G077100 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
9 Sobic.006G273800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
10 Sobic.002G341900 - -
11 Sobic.006G259000 AP2 domain containing protein, expressed K09286: EREBP-like factor
12 Sobic.001G095700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@helix-loop-helix DNA-binding domain containing protein, expressed -
13 Sobic.001G196900 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@CPuORF40 - conserved peptide uORF-containing transcript, expressed K14488: SAUR family protein
14 Sobic.003G416500 SRC2 protein, putative, expressed -
15 Sobic.002G294600 aspartic proteinase nepenthesin precursor, putative, expressed -
16 Sobic.001G192800 AAA-type ATPase family protein, putative, expressed -
17 Sobic.007G090300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.010G209100 WRKY28, expressed -
19 Sobic.009G010400 zinc finger, RING-type, putative, expressed -
20 Sobic.004G297100 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor


Gene co-expression network
sample Sobic010G102000 Sobic010G102000 Sobic009G217500 Sobic009G217500 Sobic010G102000--Sobic009G217500 Sobic010G105300 Sobic010G105300 Sobic010G102000--Sobic010G105300 Sobic003G341100 Sobic003G341100 Sobic010G102000--Sobic003G341100 Sobic002G232800 Sobic002G232800 Sobic010G102000--Sobic002G232800 Sobic001G064900 Sobic001G064900 Sobic010G102000--Sobic001G064900 Sobic007G145700 Sobic007G145700 Sobic010G102000--Sobic007G145700 Sobic010G023200 Sobic010G023200 Sobic010G102000--Sobic010G023200 Sobic007G077100 Sobic007G077100 Sobic010G102000--Sobic007G077100 Sobic006G273800 Sobic006G273800 Sobic010G102000--Sobic006G273800 Sobic009G217500--Sobic006G273800 Sobic009G217500--Sobic007G077100 Sobic009G217500--Sobic003G341100 Sobic009G217500--Sobic010G023200 Sobic009G217500--Sobic010G102000 Sobic003G416500 Sobic003G416500 Sobic009G217500--Sobic003G416500 Sobic001G341600 Sobic001G341600 Sobic009G217500--Sobic001G341600 Sobic001G035000 Sobic001G035000 Sobic009G217500--Sobic001G035000 Sobic009G217500--Sobic001G064900 Sobic010G105300--Sobic010G102000 Sobic006G259000 Sobic006G259000 Sobic010G105300--Sobic006G259000 Sobic010G105300--Sobic003G416500 Sobic010G105300--Sobic010G023200 Sobic010G105300--Sobic009G217500 Sobic010G105300--Sobic007G077100 Sobic001G489500 Sobic001G489500 Sobic010G105300--Sobic001G489500 Sobic010G105300--Sobic001G064900 Sobic002G341900 Sobic002G341900 Sobic010G105300--Sobic002G341900 Sobic003G341100--Sobic009G217500 Sobic003G341100--Sobic007G145700 Sobic009G044400 Sobic009G044400 Sobic003G341100--Sobic009G044400 Sobic003G341100--Sobic007G077100 Sobic003G341100--Sobic010G102000 Sobic003G341100--Sobic001G341600 Sobic003G341100--Sobic006G273800 Sobic003G341100--Sobic010G023200 Sobic002G118600 Sobic002G118600 Sobic003G341100--Sobic002G118600 Sobic002G232800--Sobic010G102000 Sobic002G232800--Sobic003G341100 Sobic002G232800--Sobic009G217500 Sobic002G232800--Sobic001G341600 Sobic002G232800--Sobic007G077100 Sobic002G232800--Sobic010G023200 Sobic010G071000 Sobic010G071000 Sobic002G232800--Sobic010G071000 Sobic010G209100 Sobic010G209100 Sobic002G232800--Sobic010G209100 Sobic007G090300 Sobic007G090300 Sobic002G232800--Sobic007G090300 Sobic001G064900--Sobic010G102000 Sobic001G064900--Sobic009G217500 Sobic001G064900--Sobic006G273800 Sobic001G064900--Sobic010G023200 Sobic006G257700 Sobic006G257700 Sobic001G064900--Sobic006G257700 Sobic001G064900--Sobic006G259000 Sobic001G064900--Sobic007G077100 Sobic001G095700 Sobic001G095700 Sobic001G064900--Sobic001G095700 Sobic001G064900--Sobic003G341100 Sobic007G145700--Sobic003G341100 Sobic002G294600 Sobic002G294600 Sobic007G145700--Sobic002G294600 Sobic007G145700--Sobic010G102000 Sobic001G462800 Sobic001G462800 Sobic007G145700--Sobic001G462800 Sobic006G146500 Sobic006G146500 Sobic007G145700--Sobic006G146500 Sobic007G145700--Sobic009G217500 Sobic007G145700--Sobic001G095700 Sobic007G145700--Sobic009G044400 Sobic007G145700--Sobic006G273800 Sobic010G023200--Sobic007G077100 Sobic010G023200--Sobic009G217500 Sobic010G023200--Sobic003G416500 Sobic010G023200--Sobic006G273800 Sobic010G023200--Sobic006G259000 Sobic010G023200--Sobic010G071000 Sobic010G023200--Sobic003G341100 Sobic010G023200--Sobic001G064900 Sobic010G023200--Sobic001G489500 Sobic007G077100--Sobic010G023200 Sobic007G077100--Sobic009G217500 Sobic007G077100--Sobic006G273800 Sobic007G077100--Sobic003G416500 Sobic007G077100--Sobic003G341100 Sobic007G077100--Sobic006G259000 Sobic007G077200 Sobic007G077200 Sobic007G077100--Sobic007G077200 Sobic007G077100--Sobic010G071000 Sobic007G077100--Sobic001G489500 Sobic006G273800--Sobic009G217500 Sobic006G273800--Sobic010G023200 Sobic006G273800--Sobic007G077100 Sobic006G273800--Sobic003G341100 Sobic001G370600 Sobic001G370600 Sobic006G273800--Sobic001G370600 Sobic006G273800--Sobic003G416500 Sobic006G273800--Sobic001G064900 Sobic006G273800--Sobic001G035000 Sobic010G234000 Sobic010G234000 Sobic006G273800--Sobic010G234000
Octagon: transcription factors


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