Gene annotation
Transcriptome id Sobic.001G192800.1
Synonym Sb01g016970
Functional annotation AAA-type ATPase family protein, putative, expressed
UniProt A0A1Z5S6Z4
Pfam PF00004
Panther DB PTHR23070 PTHR23070:SF13
NCBI CDD KOG0743; AAA+-type ATPase
KEGG Orthology -
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT2G46620 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os10g37500.1 : AAA-type ATPase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a006282 , Zm00025a000204 , Zm00025a017411
Brachypodium KQJ97483
Barley HORVU1Hr1G048340.1 , HORVU1Hr1G048340.2 , HORVU1Hr1G048340.3 , HORVU1Hr1G048340.4 , HORVU1Hr1G048340.5 , HORVU4Hr1G088930.2
Wheat TraesCS4B02G395500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G196900 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@CPuORF40 - conserved peptide uORF-containing transcript, expressed K14488: SAUR family protein
2 Sobic.009G217600 STE_MEKK_ste11_MAP3K.19 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
3 Sobic.001G035000 ZOS3-22 - C2H2 zinc finger protein, expressed -
4 Sobic.009G217500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_MEKK_ste11_MAP3K.18 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
5 Sobic.003G341100 WRKY24, expressed K13424: WRKY transcription factor 33
6 Sobic.003G361100 hs1, putative, expressed -
7 Sobic.006G273800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
8 Sobic.006G184400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
9 Sobic.001G341600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tyrosine protein kinase domain containing protein, putative, expressed -
10 Sobic.010G023200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.001G441100 immediate-early fungal elicitor protein CMPG1, putative, expressed -
12 Sobic.007G077100 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
13 Sobic.003G416500 SRC2 protein, putative, expressed -
14 Sobic.003G353800 avr9/Cf-9 rapidly elicited protein, putative, expressed -
15 Sobic.007G145700 expressed protein -
16 Sobic.004G305000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed K10664: E3 ubiquitin-protein ligase ATL6/9/15/31/42/55
17 Sobic.010G102000 U-box protein CMPG1, putative, expressed -
18 Sobic.005G037000 cytochrome P450, putative, expressed -
19 Sobic.001G077400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K01723: hydroperoxide dehydratase
20 Sobic.009G044400 1-aminocyclopropane-1-carboxylate oxidase, putative, expressed K05933: aminocyclopropanecarboxylate oxidase


Gene co-expression network
sample Sobic001G192800 Sobic001G192800 Sobic001G196900 Sobic001G196900 Sobic001G192800--Sobic001G196900 Sobic009G217600 Sobic009G217600 Sobic001G192800--Sobic009G217600 Sobic001G035000 Sobic001G035000 Sobic001G192800--Sobic001G035000 Sobic009G217500 Sobic009G217500 Sobic001G192800--Sobic009G217500 Sobic003G341100 Sobic003G341100 Sobic001G192800--Sobic003G341100 Sobic003G361100 Sobic003G361100 Sobic001G192800--Sobic003G361100 Sobic006G273800 Sobic006G273800 Sobic001G192800--Sobic006G273800 Sobic006G184400 Sobic006G184400 Sobic001G192800--Sobic006G184400 Sobic001G341600 Sobic001G341600 Sobic001G192800--Sobic001G341600 Sobic001G196900--Sobic001G192800 Sobic001G196900--Sobic001G341600 Sobic001G196900--Sobic009G217500 Sobic007G145700 Sobic007G145700 Sobic001G196900--Sobic007G145700 Sobic001G196900--Sobic009G217600 Sobic010G102000 Sobic010G102000 Sobic001G196900--Sobic010G102000 Sobic001G196900--Sobic001G035000 Sobic001G196900--Sobic003G341100 Sobic001G441100 Sobic001G441100 Sobic001G196900--Sobic001G441100 Sobic009G217600--Sobic001G441100 Sobic009G217600--Sobic001G341600 Sobic001G077400 Sobic001G077400 Sobic009G217600--Sobic001G077400 Sobic009G217600--Sobic001G035000 Sobic004G280900 Sobic004G280900 Sobic009G217600--Sobic004G280900 Sobic001G209800 Sobic001G209800 Sobic009G217600--Sobic001G209800 Sobic005G037000 Sobic005G037000 Sobic009G217600--Sobic005G037000 Sobic003G353800 Sobic003G353800 Sobic009G217600--Sobic003G353800 Sobic002G278500 Sobic002G278500 Sobic009G217600--Sobic002G278500 Sobic001G035000--Sobic001G441100 Sobic001G035000--Sobic001G077400 Sobic001G035000--Sobic009G217600 Sobic001G035000--Sobic005G037000 Sobic001G035000--Sobic001G341600 Sobic001G035000--Sobic001G209800 Sobic007G122500 Sobic007G122500 Sobic001G035000--Sobic007G122500 Sobic007G126300 Sobic007G126300 Sobic001G035000--Sobic007G126300 Sobic001G035000--Sobic004G280900 Sobic009G217500--Sobic006G273800 Sobic007G077100 Sobic007G077100 Sobic009G217500--Sobic007G077100 Sobic009G217500--Sobic003G341100 Sobic010G023200 Sobic010G023200 Sobic009G217500--Sobic010G023200 Sobic009G217500--Sobic010G102000 Sobic003G416500 Sobic003G416500 Sobic009G217500--Sobic003G416500 Sobic009G217500--Sobic001G341600 Sobic009G217500--Sobic001G035000 Sobic001G064900 Sobic001G064900 Sobic009G217500--Sobic001G064900 Sobic003G341100--Sobic009G217500 Sobic003G341100--Sobic007G145700 Sobic009G044400 Sobic009G044400 Sobic003G341100--Sobic009G044400 Sobic003G341100--Sobic007G077100 Sobic003G341100--Sobic010G102000 Sobic003G341100--Sobic001G341600 Sobic003G341100--Sobic006G273800 Sobic003G341100--Sobic010G023200 Sobic002G118600 Sobic002G118600 Sobic003G341100--Sobic002G118600 Sobic003G361100--Sobic001G035000 Sobic003G361100--Sobic001G192800 Sobic009G204100 Sobic009G204100 Sobic003G361100--Sobic009G204100 Sobic003G361100--Sobic009G217600 Sobic003G361100--Sobic001G441100 Sobic003G361100--Sobic003G353800 Sobic003G361100--Sobic006G184400 Sobic003G361100--Sobic005G037000 Sobic003G361100--Sobic001G209800 Sobic006G273800--Sobic009G217500 Sobic006G273800--Sobic010G023200 Sobic006G273800--Sobic007G077100 Sobic006G273800--Sobic003G341100 Sobic001G370600 Sobic001G370600 Sobic006G273800--Sobic001G370600 Sobic006G273800--Sobic003G416500 Sobic006G273800--Sobic001G064900 Sobic006G273800--Sobic001G035000 Sobic010G234000 Sobic010G234000 Sobic006G273800--Sobic010G234000 Sobic004G305000 Sobic004G305000 Sobic006G184400--Sobic004G305000 Sobic010G076600 Sobic010G076600 Sobic006G184400--Sobic010G076600 Sobic002G217100 Sobic002G217100 Sobic006G184400--Sobic002G217100 Sobic006G210300 Sobic006G210300 Sobic006G184400--Sobic006G210300 Sobic001G398500 Sobic001G398500 Sobic006G184400--Sobic001G398500 Sobic006G184400--Sobic001G192800 Sobic006G184400--Sobic003G361100 Sobic009G071800 Sobic009G071800 Sobic006G184400--Sobic009G071800 Sobic006G184400--Sobic003G353800 Sobic001G341600--Sobic009G217600 Sobic001G341600--Sobic001G441100 Sobic001G341600--Sobic001G035000 Sobic001G341600--Sobic001G077400 Sobic001G341600--Sobic004G280900 Sobic002G140300 Sobic002G140300 Sobic001G341600--Sobic002G140300 Sobic001G341600--Sobic003G353800 Sobic001G341600--Sobic002G278500 Sobic001G538866 Sobic001G538866 Sobic001G341600--Sobic001G538866
Octagon: transcription factors


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