Gene annotation
Transcriptome id Sobic.009G044400.1
Synonym Sb09g003790
Functional annotation 1-aminocyclopropane-1-carboxylate oxidase, putative, expressed
UniProt C5Z038
Pfam PF14226 PF03171
Panther DB PTHR10209 PTHR10209:SF189
NCBI CDD KOG0143; Iron/ascorbate family oxidoreductases
KEGG Orthology K05933; aminocyclopropanecarboxylate oxidase
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT1G77330 : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
RAP-DB (Rice) LOC_Os05g05680.1 : 1-aminocyclopropane-1-carboxylate oxidase, putative, expressed
MaizeGDB (Corn) Zm00025a033063 , Zm00025a055410 , Zm00025a055408 , Zm00025a055407 , Zm00025a055405 , Zm00025a038390 , Zm00025a034057 , Zm00025a034056 , Zm00025a047223 , Zm00025a012763
Brachypodium -
Barley HORVU7Hr1G028710.2 , HORVU7Hr1G028710.1 , HORVU5Hr1G067530.1 , HORVU5Hr1G067530.2 , HORVU5Hr1G067530.4 , HORVU1Hr1G020410.2 , HORVU1Hr1G020410.3 , HORVU1Hr1G020410.1 , HORVU1Hr1G020450.2 , HORVU1Hr1G020450.1 , HORVU5Hr1G067490.4 , HORVU5Hr1G067490.3 , HORVU5Hr1G067490.2 , HORVU5Hr1G067490.1 , HORVU1Hr1G020430.1 , HORVU4Hr1G017660.2 , HORVU4Hr1G017660.3 , HORVU4Hr1G017660.1 , HORVU6Hr1G079640.3 , HORVU6Hr1G079640.1 , HORVU6Hr1G079640.6 , HORVU6Hr1G079640.7 , HORVU6Hr1G079640.4 , HORVU6Hr1G079640.5
Wheat TraesCS6A02G325600 , TraesCS6D02G305400 , TraesCS6A02G325400 , TraesCS6A02G325700 , TraesCS6B02G355700 , TraesCS4D02G095500 , TraesCS5A02G234300 , TraesCSU02G067700 , TraesCS6B02G355900 , TraesCS4A02G221300 , TraesCS5B02G232700 , TraesCS6B02G356000 , TraesCS6D02G305100 , TraesCS6D02G305100
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G341100 WRKY24, expressed K13424: WRKY transcription factor 33
2 Sobic.006G078400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@abscisic stress-ripening, putative, expressed -
3 Sobic.009G217500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_MEKK_ste11_MAP3K.18 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
4 Sobic.007G145700 expressed protein -
5 Sobic.006G273800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
6 Sobic.001G341600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tyrosine protein kinase domain containing protein, putative, expressed -
7 Sobic.001G035000 ZOS3-22 - C2H2 zinc finger protein, expressed -
8 Sobic.003G361100 hs1, putative, expressed -
9 Sobic.001G192800 AAA-type ATPase family protein, putative, expressed -
10 Sobic.007G077100 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
11 Sobic.010G023200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.002G118600 SNARE domain containing protein, putative, expressed K18211: synaptosomal-associated protein 25
13 Sobic.004G297200 DUF630/DUF632 domains containing protein, putative, expressed -
14 Sobic.010G175200 low-affinity cation transporter, putative, expressed -
15 Sobic.008G036000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
16 Sobic.002G217100 tyrosine protein kinase domain containing protein, putative, expressed -
17 Sobic.009G217600 STE_MEKK_ste11_MAP3K.19 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
18 Sobic.001G095700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@helix-loop-helix DNA-binding domain containing protein, expressed -
19 Sobic.002G197600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-lg.2 - DUF26 kinases have homology to DUF26 containing loci, expressed -
20 Sobic.007G011000 synaptobrevin-related family protein, putative, expressed -


Gene co-expression network
sample Sobic009G044400 Sobic009G044400 Sobic003G341100 Sobic003G341100 Sobic009G044400--Sobic003G341100 Sobic006G078400 Sobic006G078400 Sobic009G044400--Sobic006G078400 Sobic009G217500 Sobic009G217500 Sobic009G044400--Sobic009G217500 Sobic007G145700 Sobic007G145700 Sobic009G044400--Sobic007G145700 Sobic006G273800 Sobic006G273800 Sobic009G044400--Sobic006G273800 Sobic001G341600 Sobic001G341600 Sobic009G044400--Sobic001G341600 Sobic001G035000 Sobic001G035000 Sobic009G044400--Sobic001G035000 Sobic003G361100 Sobic003G361100 Sobic009G044400--Sobic003G361100 Sobic001G192800 Sobic001G192800 Sobic009G044400--Sobic001G192800 Sobic003G341100--Sobic009G217500 Sobic003G341100--Sobic007G145700 Sobic003G341100--Sobic009G044400 Sobic007G077100 Sobic007G077100 Sobic003G341100--Sobic007G077100 Sobic010G102000 Sobic010G102000 Sobic003G341100--Sobic010G102000 Sobic003G341100--Sobic001G341600 Sobic003G341100--Sobic006G273800 Sobic010G023200 Sobic010G023200 Sobic003G341100--Sobic010G023200 Sobic002G118600 Sobic002G118600 Sobic003G341100--Sobic002G118600 Sobic006G078400--Sobic009G044400 Sobic003G429300 Sobic003G429300 Sobic006G078400--Sobic003G429300 Sobic003G363200 Sobic003G363200 Sobic006G078400--Sobic003G363200 Sobic001G290400 Sobic001G290400 Sobic006G078400--Sobic001G290400 Sobic006G078400--Sobic002G118600 Sobic010G175200 Sobic010G175200 Sobic006G078400--Sobic010G175200 Sobic006G078400--Sobic001G341600 Sobic001G147200 Sobic001G147200 Sobic006G078400--Sobic001G147200 Sobic006G228300 Sobic006G228300 Sobic006G078400--Sobic006G228300 Sobic009G217500--Sobic006G273800 Sobic009G217500--Sobic007G077100 Sobic009G217500--Sobic003G341100 Sobic009G217500--Sobic010G023200 Sobic009G217500--Sobic010G102000 Sobic003G416500 Sobic003G416500 Sobic009G217500--Sobic003G416500 Sobic009G217500--Sobic001G341600 Sobic009G217500--Sobic001G035000 Sobic001G064900 Sobic001G064900 Sobic009G217500--Sobic001G064900 Sobic007G145700--Sobic003G341100 Sobic002G294600 Sobic002G294600 Sobic007G145700--Sobic002G294600 Sobic007G145700--Sobic010G102000 Sobic001G462800 Sobic001G462800 Sobic007G145700--Sobic001G462800 Sobic006G146500 Sobic006G146500 Sobic007G145700--Sobic006G146500 Sobic007G145700--Sobic009G217500 Sobic001G095700 Sobic001G095700 Sobic007G145700--Sobic001G095700 Sobic007G145700--Sobic009G044400 Sobic007G145700--Sobic006G273800 Sobic006G273800--Sobic009G217500 Sobic006G273800--Sobic010G023200 Sobic006G273800--Sobic007G077100 Sobic006G273800--Sobic003G341100 Sobic001G370600 Sobic001G370600 Sobic006G273800--Sobic001G370600 Sobic006G273800--Sobic003G416500 Sobic006G273800--Sobic001G064900 Sobic006G273800--Sobic001G035000 Sobic010G234000 Sobic010G234000 Sobic006G273800--Sobic010G234000 Sobic009G217600 Sobic009G217600 Sobic001G341600--Sobic009G217600 Sobic001G441100 Sobic001G441100 Sobic001G341600--Sobic001G441100 Sobic001G341600--Sobic001G035000 Sobic001G077400 Sobic001G077400 Sobic001G341600--Sobic001G077400 Sobic004G280900 Sobic004G280900 Sobic001G341600--Sobic004G280900 Sobic002G140300 Sobic002G140300 Sobic001G341600--Sobic002G140300 Sobic003G353800 Sobic003G353800 Sobic001G341600--Sobic003G353800 Sobic002G278500 Sobic002G278500 Sobic001G341600--Sobic002G278500 Sobic001G538866 Sobic001G538866 Sobic001G341600--Sobic001G538866 Sobic001G035000--Sobic001G441100 Sobic001G035000--Sobic001G077400 Sobic001G035000--Sobic009G217600 Sobic005G037000 Sobic005G037000 Sobic001G035000--Sobic005G037000 Sobic001G035000--Sobic001G341600 Sobic001G209800 Sobic001G209800 Sobic001G035000--Sobic001G209800 Sobic007G122500 Sobic007G122500 Sobic001G035000--Sobic007G122500 Sobic007G126300 Sobic007G126300 Sobic001G035000--Sobic007G126300 Sobic001G035000--Sobic004G280900 Sobic003G361100--Sobic001G035000 Sobic003G361100--Sobic001G192800 Sobic009G204100 Sobic009G204100 Sobic003G361100--Sobic009G204100 Sobic003G361100--Sobic009G217600 Sobic003G361100--Sobic001G441100 Sobic003G361100--Sobic003G353800 Sobic006G184400 Sobic006G184400 Sobic003G361100--Sobic006G184400 Sobic003G361100--Sobic005G037000 Sobic003G361100--Sobic001G209800 Sobic001G196900 Sobic001G196900 Sobic001G192800--Sobic001G196900 Sobic001G192800--Sobic009G217600 Sobic001G192800--Sobic001G035000 Sobic001G192800--Sobic009G217500 Sobic001G192800--Sobic003G341100 Sobic001G192800--Sobic003G361100 Sobic001G192800--Sobic006G273800 Sobic001G192800--Sobic006G184400 Sobic001G192800--Sobic001G341600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.