Gene annotation
Transcriptome id Sobic.002G118600.3,Sobic.002G118600.2,Sobic.002G118600.1
Synonym SNP33, Sb02g010100, ATSNAP33, SNAP33, ATSNAP33B
Functional annotation SNARE domain containing protein, putative, expressed
UniProt A0A1B6QAN5 , A0A1B6QAQ0
Pfam -
Panther DB PTHR19305 PTHR19305:SF11
NCBI CDD KOG3065; SNAP-25 (synaptosome-associated protein) component of SNARE complex
KEGG Orthology K18211; synaptosomal-associated protein 25
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G61210 : soluble N-ethylmaleimide-sensitive factor adaptor protein 33
RAP-DB (Rice) LOC_Os02g24080.4 : SNARE domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a020528 , Zm00025a045760
Brachypodium KQJ99707 , PNT68747 , PNT68746
Barley HORVU7Hr1G008760.1 , HORVU7Hr1G008760.2
Wheat TraesCS4A02G435200 , TraesCS7D02G044400 , TraesCS3D02G384300 , TraesCS3A02G391300 , TraesCS3B02G423500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G147200 DNA-binding protein-like, putative, expressed K10624: E3 ubiquitin-protein ligase RBBP6
2 Sobic.001G341600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tyrosine protein kinase domain containing protein, putative, expressed -
3 Sobic.003G341100 WRKY24, expressed K13424: WRKY transcription factor 33
4 Sobic.010G228000 Protein kinase domain containing protein, expressed -
5 Sobic.002G374100 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
6 Sobic.001G290400 no apical meristem protein, putative, expressed -
7 Sobic.007G011000 synaptobrevin-related family protein, putative, expressed -
8 Sobic.001G538866 - -
9 Sobic.006G228300 ethylene-responsive protein related, putative, expressed -
10 Sobic.004G280800 Tannin1 encodes a WD40 protein homologous to the Arabidopsis proanthocyanidin regulator transparent testa glabra1 (TTG1). (PubmedID : 25272193)@WD40 protein(PubMedID : 22699509)@Transcription factor for tannin accumulation in seed(PubMedID : 22699509)@WD domain, G-beta repeat domain containing protein, expressed K11805: DCAF7, DDB1- and CUL4-associated factor 7
11 Sobic.001G403600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF538 domain containing protein, putative, expressed -
12 Sobic.009G217600 STE_MEKK_ste11_MAP3K.19 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
13 Sobic.002G379400 CAMK_CAMK_like.7 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2
14 Sobic.002G330300 chitin-inducible gibberellin-responsive protein, putative, expressed -
15 Sobic.006G095600 lipoxygenase (LOX) that catalyzes the first committed step of JA biosynthesis(PubMedID : 31597271)@lipoxygenase protein, putative, expressed K00454: lipoxygenase
16 Sobic.003G296700 protein kinase domain containing protein, expressed -
17 Sobic.003G338900 expressed protein -
18 Sobic.002G354900 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@gibberellin response modulator protein, putative, expressed -
19 Sobic.001G012800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@regulatory protein, putative, expressed -
20 Sobic.003G352400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@C2 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic002G118600 Sobic002G118600 Sobic001G147200 Sobic001G147200 Sobic002G118600--Sobic001G147200 Sobic001G341600 Sobic001G341600 Sobic002G118600--Sobic001G341600 Sobic003G341100 Sobic003G341100 Sobic002G118600--Sobic003G341100 Sobic010G228000 Sobic010G228000 Sobic002G118600--Sobic010G228000 Sobic002G374100 Sobic002G374100 Sobic002G118600--Sobic002G374100 Sobic001G290400 Sobic001G290400 Sobic002G118600--Sobic001G290400 Sobic007G011000 Sobic007G011000 Sobic002G118600--Sobic007G011000 Sobic001G538866 Sobic001G538866 Sobic002G118600--Sobic001G538866 Sobic006G228300 Sobic006G228300 Sobic002G118600--Sobic006G228300 Sobic003G019200 Sobic003G019200 Sobic001G147200--Sobic003G019200 Sobic010G246000 Sobic010G246000 Sobic001G147200--Sobic010G246000 Sobic001G147200--Sobic002G118600 Sobic010G204300 Sobic010G204300 Sobic001G147200--Sobic010G204300 Sobic001G147200--Sobic006G228300 Sobic001G399100 Sobic001G399100 Sobic001G147200--Sobic001G399100 Sobic001G147200--Sobic001G538866 Sobic001G147200--Sobic002G374100 Sobic006G263100 Sobic006G263100 Sobic001G147200--Sobic006G263100 Sobic009G217600 Sobic009G217600 Sobic001G341600--Sobic009G217600 Sobic001G441100 Sobic001G441100 Sobic001G341600--Sobic001G441100 Sobic001G035000 Sobic001G035000 Sobic001G341600--Sobic001G035000 Sobic001G077400 Sobic001G077400 Sobic001G341600--Sobic001G077400 Sobic004G280900 Sobic004G280900 Sobic001G341600--Sobic004G280900 Sobic002G140300 Sobic002G140300 Sobic001G341600--Sobic002G140300 Sobic003G353800 Sobic003G353800 Sobic001G341600--Sobic003G353800 Sobic002G278500 Sobic002G278500 Sobic001G341600--Sobic002G278500 Sobic001G341600--Sobic001G538866 Sobic009G217500 Sobic009G217500 Sobic003G341100--Sobic009G217500 Sobic007G145700 Sobic007G145700 Sobic003G341100--Sobic007G145700 Sobic009G044400 Sobic009G044400 Sobic003G341100--Sobic009G044400 Sobic007G077100 Sobic007G077100 Sobic003G341100--Sobic007G077100 Sobic010G102000 Sobic010G102000 Sobic003G341100--Sobic010G102000 Sobic003G341100--Sobic001G341600 Sobic006G273800 Sobic006G273800 Sobic003G341100--Sobic006G273800 Sobic010G023200 Sobic010G023200 Sobic003G341100--Sobic010G023200 Sobic003G341100--Sobic002G118600 Sobic010G228000--Sobic002G374100 Sobic010G228000--Sobic002G118600 Sobic007G188100 Sobic007G188100 Sobic010G228000--Sobic007G188100 Sobic002G294700 Sobic002G294700 Sobic010G228000--Sobic002G294700 Sobic002G330300 Sobic002G330300 Sobic010G228000--Sobic002G330300 Sobic004G280800 Sobic004G280800 Sobic010G228000--Sobic004G280800 Sobic010G228000--Sobic010G246000 Sobic002G379400 Sobic002G379400 Sobic010G228000--Sobic002G379400 Sobic010G228000--Sobic001G290400 Sobic002G374100--Sobic002G294700 Sobic002G374100--Sobic010G246000 Sobic001G516600 Sobic001G516600 Sobic002G374100--Sobic001G516600 Sobic002G354900 Sobic002G354900 Sobic002G374100--Sobic002G354900 Sobic002G374100--Sobic010G228000 Sobic004G036600 Sobic004G036600 Sobic002G374100--Sobic004G036600 Sobic002G353400 Sobic002G353400 Sobic002G374100--Sobic002G353400 Sobic008G177800 Sobic008G177800 Sobic002G374100--Sobic008G177800 Sobic002G374100--Sobic002G118600 Sobic001G290400--Sobic002G118600 Sobic001G290400--Sobic002G294700 Sobic001G051800 Sobic001G051800 Sobic001G290400--Sobic001G051800 Sobic004G053200 Sobic004G053200 Sobic001G290400--Sobic004G053200 Sobic003G338900 Sobic003G338900 Sobic001G290400--Sobic003G338900 Sobic001G473900 Sobic001G473900 Sobic001G290400--Sobic001G473900 Sobic001G290400--Sobic010G228000 Sobic005G139700 Sobic005G139700 Sobic001G290400--Sobic005G139700 Sobic001G290400--Sobic001G538866 Sobic007G011000--Sobic002G118600 Sobic007G011000--Sobic002G330300 Sobic007G011000--Sobic010G228000 Sobic007G212200 Sobic007G212200 Sobic007G011000--Sobic007G212200 Sobic007G011000--Sobic004G280800 Sobic003G425200 Sobic003G425200 Sobic007G011000--Sobic003G425200 Sobic007G011000--Sobic002G354900 Sobic010G041700 Sobic010G041700 Sobic007G011000--Sobic010G041700 Sobic004G025000 Sobic004G025000 Sobic007G011000--Sobic004G025000 Sobic001G538866--Sobic002G140300 Sobic001G040200 Sobic001G040200 Sobic001G538866--Sobic001G040200 Sobic001G538866--Sobic004G280900 Sobic002G036100 Sobic002G036100 Sobic001G538866--Sobic002G036100 Sobic003G324400 Sobic003G324400 Sobic001G538866--Sobic003G324400 Sobic006G165100 Sobic006G165100 Sobic001G538866--Sobic006G165100 Sobic001G538866--Sobic001G077400 Sobic007G151100 Sobic007G151100 Sobic001G538866--Sobic007G151100 Sobic009G200700 Sobic009G200700 Sobic001G538866--Sobic009G200700 Sobic006G089300 Sobic006G089300 Sobic006G228300--Sobic006G089300 Sobic010G200700 Sobic010G200700 Sobic006G228300--Sobic010G200700 Sobic006G179500 Sobic006G179500 Sobic006G228300--Sobic006G179500 Sobic006G228300--Sobic001G040200 Sobic006G228300--Sobic001G538866 Sobic006G228300--Sobic002G140300 Sobic001G095300 Sobic001G095300 Sobic006G228300--Sobic001G095300 Sobic002G131800 Sobic002G131800 Sobic006G228300--Sobic002G131800 Sobic006G228300--Sobic001G341600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.