Gene annotation
Transcriptome id Sobic.001G403600.1
Synonym Sb01g038180
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
DUF538 domain containing protein, putative, expressed
UniProt C5WNG3
Pfam PF04398
Panther DB PTHR31676 PTHR31676:SF25
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G08890 : Protein of unknown function, DUF538
RAP-DB (Rice) LOC_Os03g18560.1 : DUF538 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a002037
Brachypodium PNT77566 , KQK22093
Barley HORVU4Hr1G055270.2 , HORVU4Hr1G055270.1
Wheat TraesCS4A02G114000 , TraesCS4D02G191500 , TraesCS4B02G190100
Populus -


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cDNA sequences
Sobic.001G403600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G118600 SNARE domain containing protein, putative, expressed K18211: synaptosomal-associated protein 25
2 Sobic.001G290400 no apical meristem protein, putative, expressed -
3 Sobic.001G081600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
4 Sobic.010G228000 Protein kinase domain containing protein, expressed -
5 Sobic.004G280800 Tannin1 encodes a WD40 protein homologous to the Arabidopsis proanthocyanidin regulator transparent testa glabra1 (TTG1). (PubmedID : 25272193)@WD40 protein(PubMedID : 22699509)@Transcription factor for tannin accumulation in seed(PubMedID : 22699509)@WD domain, G-beta repeat domain containing protein, expressed K11805: DCAF7, DDB1- and CUL4-associated factor 7
6 Sobic.001G189700 DNAJ heat shock N-terminal domain-containing protein, putative, expressed -
7 Sobic.007G011000 synaptobrevin-related family protein, putative, expressed -
8 Sobic.005G139700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@respiratory burst oxidase, putative, expressed K13447: respiratory burst oxidase
9 Sobic.001G482700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
10 Sobic.002G197600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-lg.2 - DUF26 kinases have homology to DUF26 containing loci, expressed -
11 Sobic.003G338900 expressed protein -
12 Sobic.004G053200 Cupin domain containing protein, expressed -
13 Sobic.004G025000 CAMK_CAMK_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
14 Sobic.003G431000 spotted leaf 11, putative, expressed -
15 Sobic.006G263100 expressed protein -
16 Sobic.007G169200 EF hand family protein, putative, expressed K13448: calcium-binding protein CML
17 Sobic.004G145200 membrane attack complex component/perforin/complement C9, putative, expressed -
18 Sobic.003G296700 protein kinase domain containing protein, expressed -
19 Sobic.006G095600 lipoxygenase (LOX) that catalyzes the first committed step of JA biosynthesis(PubMedID : 31597271)@lipoxygenase protein, putative, expressed K00454: lipoxygenase
20 Sobic.003G424500 Putative uncharacterized protein(PubMedID : 24906815)@expressed protein -


Gene co-expression network
sample Sobic001G403600 Sobic001G403600 Sobic002G118600 Sobic002G118600 Sobic001G403600--Sobic002G118600 Sobic001G290400 Sobic001G290400 Sobic001G403600--Sobic001G290400 Sobic001G081600 Sobic001G081600 Sobic001G403600--Sobic001G081600 Sobic010G228000 Sobic010G228000 Sobic001G403600--Sobic010G228000 Sobic004G280800 Sobic004G280800 Sobic001G403600--Sobic004G280800 Sobic001G189700 Sobic001G189700 Sobic001G403600--Sobic001G189700 Sobic007G011000 Sobic007G011000 Sobic001G403600--Sobic007G011000 Sobic005G139700 Sobic005G139700 Sobic001G403600--Sobic005G139700 Sobic001G482700 Sobic001G482700 Sobic001G403600--Sobic001G482700 Sobic001G147200 Sobic001G147200 Sobic002G118600--Sobic001G147200 Sobic001G341600 Sobic001G341600 Sobic002G118600--Sobic001G341600 Sobic003G341100 Sobic003G341100 Sobic002G118600--Sobic003G341100 Sobic002G118600--Sobic010G228000 Sobic002G374100 Sobic002G374100 Sobic002G118600--Sobic002G374100 Sobic002G118600--Sobic001G290400 Sobic002G118600--Sobic007G011000 Sobic001G538866 Sobic001G538866 Sobic002G118600--Sobic001G538866 Sobic006G228300 Sobic006G228300 Sobic002G118600--Sobic006G228300 Sobic001G290400--Sobic002G118600 Sobic002G294700 Sobic002G294700 Sobic001G290400--Sobic002G294700 Sobic001G051800 Sobic001G051800 Sobic001G290400--Sobic001G051800 Sobic004G053200 Sobic004G053200 Sobic001G290400--Sobic004G053200 Sobic003G338900 Sobic003G338900 Sobic001G290400--Sobic003G338900 Sobic001G473900 Sobic001G473900 Sobic001G290400--Sobic001G473900 Sobic001G290400--Sobic010G228000 Sobic001G290400--Sobic005G139700 Sobic001G290400--Sobic001G538866 Sobic001G462800 Sobic001G462800 Sobic001G081600--Sobic001G462800 Sobic002G217100 Sobic002G217100 Sobic001G081600--Sobic002G217100 Sobic006G210300 Sobic006G210300 Sobic001G081600--Sobic006G210300 Sobic004G283300 Sobic004G283300 Sobic001G081600--Sobic004G283300 Sobic002G197600 Sobic002G197600 Sobic001G081600--Sobic002G197600 Sobic004G281200 Sobic004G281200 Sobic001G081600--Sobic004G281200 Sobic002G344700 Sobic002G344700 Sobic001G081600--Sobic002G344700 Sobic004G025000 Sobic004G025000 Sobic001G081600--Sobic004G025000 Sobic001G476400 Sobic001G476400 Sobic001G081600--Sobic001G476400 Sobic010G228000--Sobic002G374100 Sobic010G228000--Sobic002G118600 Sobic007G188100 Sobic007G188100 Sobic010G228000--Sobic007G188100 Sobic010G228000--Sobic002G294700 Sobic002G330300 Sobic002G330300 Sobic010G228000--Sobic002G330300 Sobic010G228000--Sobic004G280800 Sobic010G246000 Sobic010G246000 Sobic010G228000--Sobic010G246000 Sobic002G379400 Sobic002G379400 Sobic010G228000--Sobic002G379400 Sobic010G228000--Sobic001G290400 Sobic004G280800--Sobic010G228000 Sobic006G263100 Sobic006G263100 Sobic004G280800--Sobic006G263100 Sobic004G280800--Sobic002G118600 Sobic004G280800--Sobic001G290400 Sobic004G280800--Sobic003G338900 Sobic004G280800--Sobic004G025000 Sobic004G280800--Sobic007G011000 Sobic004G280800--Sobic004G053200 Sobic004G280800--Sobic001G189700 Sobic001G189700--Sobic004G053200 Sobic001G189700--Sobic003G338900 Sobic002G080000 Sobic002G080000 Sobic001G189700--Sobic002G080000 Sobic001G189700--Sobic004G280800 Sobic001G189700--Sobic001G290400 Sobic001G189700--Sobic001G403600 Sobic003G012800 Sobic003G012800 Sobic001G189700--Sobic003G012800 Sobic009G044400 Sobic009G044400 Sobic001G189700--Sobic009G044400 Sobic001G189700--Sobic005G139700 Sobic007G011000--Sobic002G118600 Sobic007G011000--Sobic002G330300 Sobic007G011000--Sobic010G228000 Sobic007G212200 Sobic007G212200 Sobic007G011000--Sobic007G212200 Sobic007G011000--Sobic004G280800 Sobic003G425200 Sobic003G425200 Sobic007G011000--Sobic003G425200 Sobic002G354900 Sobic002G354900 Sobic007G011000--Sobic002G354900 Sobic010G041700 Sobic010G041700 Sobic007G011000--Sobic010G041700 Sobic007G011000--Sobic004G025000 Sobic003G363200 Sobic003G363200 Sobic005G139700--Sobic003G363200 Sobic010G245800 Sobic010G245800 Sobic005G139700--Sobic010G245800 Sobic005G139700--Sobic001G290400 Sobic005G139700--Sobic002G197600 Sobic010G200700 Sobic010G200700 Sobic005G139700--Sobic010G200700 Sobic003G431000 Sobic003G431000 Sobic005G139700--Sobic003G431000 Sobic005G139700--Sobic001G051800 Sobic001G028000 Sobic001G028000 Sobic005G139700--Sobic001G028000 Sobic005G139700--Sobic001G403600 Sobic004G051166 Sobic004G051166 Sobic001G482700--Sobic004G051166 Sobic002G021300 Sobic002G021300 Sobic001G482700--Sobic002G021300 Sobic004G268700 Sobic004G268700 Sobic001G482700--Sobic004G268700 Sobic008G036000 Sobic008G036000 Sobic001G482700--Sobic008G036000 Sobic001G482700--Sobic001G290400 Sobic001G482700--Sobic001G403600 Sobic001G482700--Sobic001G081600 Sobic001G482700--Sobic002G344700 Sobic001G482700--Sobic002G197600
Octagon: transcription factors


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