Gene annotation
Transcriptome id Sobic.004G053200.1
Synonym Sb04g004510
Functional annotation Cupin domain containing protein, expressed
UniProt C5XVI7
Pfam PF07883
Panther DB PTHR31238 PTHR31238:SF25
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G39110 : RmlC-like cupins superfamily protein
RAP-DB (Rice) LOC_Os02g29000.1 : Cupin domain containing protein, expressed
MaizeGDB (Corn) Zm00025a035173 , Zm00025a024209 , Zm00025a045177 , Zm00025a012376 , Zm00025a019053 , Zm00025a055675
Brachypodium KQK03989 , PNT62629
Barley HORVU0Hr1G022140.2 , HORVU0Hr1G022140.1
Wheat TraesCS7A02G439600 , TraesCS7B02G338500 , TraesCS7B02G338400 , TraesCS3D02G011100 , TraesCS7D02G429200 , TraesCS7A02G439400 , TraesCS7D02G428900 , TraesCS7D02G513400 , TraesCS7A02G439500 , TraesCS7A02G524500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G189700 DNAJ heat shock N-terminal domain-containing protein, putative, expressed -
2 Sobic.001G290400 no apical meristem protein, putative, expressed -
3 Sobic.004G280800 Tannin1 encodes a WD40 protein homologous to the Arabidopsis proanthocyanidin regulator transparent testa glabra1 (TTG1). (PubmedID : 25272193)@WD40 protein(PubMedID : 22699509)@Transcription factor for tannin accumulation in seed(PubMedID : 22699509)@WD domain, G-beta repeat domain containing protein, expressed K11805: DCAF7, DDB1- and CUL4-associated factor 7
4 Sobic.003G338900 expressed protein -
5 Sobic.001G473900 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
6 Sobic.004G025000 CAMK_CAMK_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
7 Sobic.001G476400 - -
8 Sobic.001G081600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
9 Sobic.006G095600 lipoxygenase (LOX) that catalyzes the first committed step of JA biosynthesis(PubMedID : 31597271)@lipoxygenase protein, putative, expressed K00454: lipoxygenase
10 Sobic.003G268700 STE_MEKK_ste11_MAP3K.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
11 Sobic.002G118600 SNARE domain containing protein, putative, expressed K18211: synaptosomal-associated protein 25
12 Sobic.003G429300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@NADPH quinone oxidoreductase, putative, expressed -
13 Sobic.009G030600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@TKL_IRAK_DUF26-lf.3 - DUF26 kinases have homology to DUF26 containing loci, expressed -
14 Sobic.002G379400 CAMK_CAMK_like.7 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2
15 Sobic.010G076600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Serine/threonine-protein kinase RIPK(PubMedID : 31721651)@tyrosine protein kinase domain containing protein, putative, expressed -
16 Sobic.003G296700 protein kinase domain containing protein, expressed -
17 Sobic.001G403600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF538 domain containing protein, putative, expressed -
18 Sobic.009G184400 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
19 Sobic.002G294700 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -
20 Sobic.007G057100 expressed protein -


Gene co-expression network
sample Sobic004G053200 Sobic004G053200 Sobic001G189700 Sobic001G189700 Sobic004G053200--Sobic001G189700 Sobic001G290400 Sobic001G290400 Sobic004G053200--Sobic001G290400 Sobic004G280800 Sobic004G280800 Sobic004G053200--Sobic004G280800 Sobic003G338900 Sobic003G338900 Sobic004G053200--Sobic003G338900 Sobic001G473900 Sobic001G473900 Sobic004G053200--Sobic001G473900 Sobic004G025000 Sobic004G025000 Sobic004G053200--Sobic004G025000 Sobic001G476400 Sobic001G476400 Sobic004G053200--Sobic001G476400 Sobic001G081600 Sobic001G081600 Sobic004G053200--Sobic001G081600 Sobic006G095600 Sobic006G095600 Sobic004G053200--Sobic006G095600 Sobic001G189700--Sobic004G053200 Sobic001G189700--Sobic003G338900 Sobic002G080000 Sobic002G080000 Sobic001G189700--Sobic002G080000 Sobic001G189700--Sobic004G280800 Sobic001G189700--Sobic001G290400 Sobic001G403600 Sobic001G403600 Sobic001G189700--Sobic001G403600 Sobic003G012800 Sobic003G012800 Sobic001G189700--Sobic003G012800 Sobic009G044400 Sobic009G044400 Sobic001G189700--Sobic009G044400 Sobic005G139700 Sobic005G139700 Sobic001G189700--Sobic005G139700 Sobic002G118600 Sobic002G118600 Sobic001G290400--Sobic002G118600 Sobic002G294700 Sobic002G294700 Sobic001G290400--Sobic002G294700 Sobic001G051800 Sobic001G051800 Sobic001G290400--Sobic001G051800 Sobic001G290400--Sobic004G053200 Sobic001G290400--Sobic003G338900 Sobic001G290400--Sobic001G473900 Sobic010G228000 Sobic010G228000 Sobic001G290400--Sobic010G228000 Sobic001G290400--Sobic005G139700 Sobic001G538866 Sobic001G538866 Sobic001G290400--Sobic001G538866 Sobic004G280800--Sobic010G228000 Sobic006G263100 Sobic006G263100 Sobic004G280800--Sobic006G263100 Sobic004G280800--Sobic002G118600 Sobic004G280800--Sobic001G290400 Sobic004G280800--Sobic003G338900 Sobic004G280800--Sobic004G025000 Sobic007G011000 Sobic007G011000 Sobic004G280800--Sobic007G011000 Sobic004G280800--Sobic004G053200 Sobic004G280800--Sobic001G189700 Sobic003G338900--Sobic001G189700 Sobic010G076600 Sobic010G076600 Sobic003G338900--Sobic010G076600 Sobic009G217600 Sobic009G217600 Sobic003G338900--Sobic009G217600 Sobic002G379400 Sobic002G379400 Sobic003G338900--Sobic002G379400 Sobic003G338900--Sobic001G476400 Sobic001G341600 Sobic001G341600 Sobic003G338900--Sobic001G341600 Sobic003G338900--Sobic001G290400 Sobic003G296700 Sobic003G296700 Sobic003G338900--Sobic003G296700 Sobic003G338900--Sobic001G473900 Sobic001G473900--Sobic001G476400 Sobic001G473900--Sobic010G076600 Sobic002G203000 Sobic002G203000 Sobic001G473900--Sobic002G203000 Sobic009G071800 Sobic009G071800 Sobic001G473900--Sobic009G071800 Sobic001G077700 Sobic001G077700 Sobic001G473900--Sobic001G077700 Sobic001G473900--Sobic006G095600 Sobic001G209800 Sobic001G209800 Sobic001G473900--Sobic001G209800 Sobic003G268700 Sobic003G268700 Sobic001G473900--Sobic003G268700 Sobic002G248100 Sobic002G248100 Sobic001G473900--Sobic002G248100 Sobic004G025000--Sobic001G081600 Sobic004G025000--Sobic002G379400 Sobic004G025000--Sobic006G095600 Sobic002G344700 Sobic002G344700 Sobic004G025000--Sobic002G344700 Sobic002G330300 Sobic002G330300 Sobic004G025000--Sobic002G330300 Sobic004G025000--Sobic001G476400 Sobic001G063600 Sobic001G063600 Sobic004G025000--Sobic001G063600 Sobic001G314700 Sobic001G314700 Sobic004G025000--Sobic001G314700 Sobic010G076700 Sobic010G076700 Sobic004G025000--Sobic010G076700 Sobic001G476400--Sobic001G063600 Sobic001G051600 Sobic001G051600 Sobic001G476400--Sobic001G051600 Sobic001G476400--Sobic001G473900 Sobic001G476400--Sobic010G076600 Sobic001G476400--Sobic001G081600 Sobic010G080400 Sobic010G080400 Sobic001G476400--Sobic010G080400 Sobic001G476400--Sobic006G095600 Sobic004G283300 Sobic004G283300 Sobic001G476400--Sobic004G283300 Sobic001G489600 Sobic001G489600 Sobic001G476400--Sobic001G489600 Sobic001G462800 Sobic001G462800 Sobic001G081600--Sobic001G462800 Sobic002G217100 Sobic002G217100 Sobic001G081600--Sobic002G217100 Sobic006G210300 Sobic006G210300 Sobic001G081600--Sobic006G210300 Sobic001G081600--Sobic004G283300 Sobic002G197600 Sobic002G197600 Sobic001G081600--Sobic002G197600 Sobic004G281200 Sobic004G281200 Sobic001G081600--Sobic004G281200 Sobic001G081600--Sobic002G344700 Sobic001G081600--Sobic004G025000 Sobic001G081600--Sobic001G476400 Sobic006G095600--Sobic001G489600 Sobic006G095600--Sobic002G203000 Sobic006G095600--Sobic001G051600 Sobic006G095600--Sobic001G077700 Sobic006G095600--Sobic009G071800 Sobic007G057100 Sobic007G057100 Sobic006G095600--Sobic007G057100 Sobic004G084100 Sobic004G084100 Sobic006G095600--Sobic004G084100 Sobic006G095600--Sobic001G473900 Sobic006G095600--Sobic001G476400
Octagon: transcription factors


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