Gene annotation
Transcriptome id Sobic.001G473900.1
Synonym SbERF8, ethylene response factor 8, RAP2.4, Sb01g044410
Functional annotation Not investigated (PubMedID : 23766026)
ethylene-responsive transcription factor, putative, expressed
UniProt C5WUS4
Pfam PF00847
Panther DB PTHR31657 PTHR31657:SF5
NCBI CDD -
KEGG Orthology K09286; EREBP-like factor
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT1G78080 : related to AP2 4
RAP-DB (Rice) LOC_Os03g09170.1 : ethylene-responsive transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a053203 , Zm00025a046712 , Zm00025a035951 , Zm00025a055020 , Zm00025a022855 , Zm00025a033320 , Zm00025a053313 , Zm00025a000875 , Zm00025a057002 , Zm00025a001066 , Zm00025a045437 , Zm00025a021006 , Zm00025a022123 , Zm00025a032103 , Zm00025a033171 , Zm00025a009843 , Zm00025a000671
Brachypodium KQJ90021 , KQK23365 , KQJ98629 , PNT61818 , KQK00491 , PNT62439 , KQK23180 , KQJ98221 , KQK12503 , KQJ86112 , PNT78049 , KQJ94686
Barley HORVU6Hr1G060220.6 , HORVU6Hr1G060220.7 , HORVU6Hr1G060220.4 , HORVU6Hr1G060220.5 , HORVU6Hr1G060220.3 , HORVU6Hr1G060220.2 , HORVU6Hr1G060220.1 , HORVU4Hr1G075810.1 , HORVU5Hr1G018720.1 , HORVU7Hr1G037180.2 , HORVU3Hr1G030310.1 , HORVU7Hr1G037180.3 , HORVU7Hr1G037180.1 , HORVU6Hr1G074970.3 , HORVU6Hr1G074970.2 , HORVU6Hr1G074970.1 , HORVU5Hr1G058270.1 , HORVU5Hr1G058270.3 , HORVU5Hr1G058270.2 , HORVU5Hr1G058270.5 , HORVU5Hr1G058270.4 , HORVU5Hr1G058270.6 , HORVU4Hr1G071890.3 , HORVU4Hr1G071890.2 , HORVU4Hr1G000960.1 , HORVU6Hr1G060140.3 , HORVU6Hr1G060140.1
Wheat TraesCS5D02G200900 , TraesCS5B02G193200 , TraesCS4A02G035400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G476400 - -
2 Sobic.010G076600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Serine/threonine-protein kinase RIPK(PubMedID : 31721651)@tyrosine protein kinase domain containing protein, putative, expressed -
3 Sobic.002G203000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
4 Sobic.009G071800 6-phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
5 Sobic.001G077700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.006G095600 lipoxygenase (LOX) that catalyzes the first committed step of JA biosynthesis(PubMedID : 31597271)@lipoxygenase protein, putative, expressed K00454: lipoxygenase
7 Sobic.001G209800 harpin-induced protein 1 domain containing protein, expressed -
8 Sobic.003G268700 STE_MEKK_ste11_MAP3K.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
9 Sobic.002G248100 expressed protein -
10 Sobic.007G057100 expressed protein -
11 Sobic.009G170100 DUF640 domain containing protein, putative, expressed -
12 Sobic.001G290400 no apical meristem protein, putative, expressed -
13 Sobic.003G338900 expressed protein -
14 Sobic.001G489600 expressed protein -
15 Sobic.002G197600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-lg.2 - DUF26 kinases have homology to DUF26 containing loci, expressed -
16 Sobic.004G051166 - -
17 Sobic.008G036000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
18 Sobic.001G081600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
19 Sobic.004G025000 CAMK_CAMK_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
20 Sobic.010G076700 expressed protein -


Gene co-expression network
sample Sobic001G473900 Sobic001G473900 Sobic001G476400 Sobic001G476400 Sobic001G473900--Sobic001G476400 Sobic010G076600 Sobic010G076600 Sobic001G473900--Sobic010G076600 Sobic002G203000 Sobic002G203000 Sobic001G473900--Sobic002G203000 Sobic009G071800 Sobic009G071800 Sobic001G473900--Sobic009G071800 Sobic001G077700 Sobic001G077700 Sobic001G473900--Sobic001G077700 Sobic006G095600 Sobic006G095600 Sobic001G473900--Sobic006G095600 Sobic001G209800 Sobic001G209800 Sobic001G473900--Sobic001G209800 Sobic003G268700 Sobic003G268700 Sobic001G473900--Sobic003G268700 Sobic002G248100 Sobic002G248100 Sobic001G473900--Sobic002G248100 Sobic001G063600 Sobic001G063600 Sobic001G476400--Sobic001G063600 Sobic001G051600 Sobic001G051600 Sobic001G476400--Sobic001G051600 Sobic001G476400--Sobic001G473900 Sobic001G476400--Sobic010G076600 Sobic001G081600 Sobic001G081600 Sobic001G476400--Sobic001G081600 Sobic010G080400 Sobic010G080400 Sobic001G476400--Sobic010G080400 Sobic001G476400--Sobic006G095600 Sobic004G283300 Sobic004G283300 Sobic001G476400--Sobic004G283300 Sobic001G489600 Sobic001G489600 Sobic001G476400--Sobic001G489600 Sobic006G184400 Sobic006G184400 Sobic010G076600--Sobic006G184400 Sobic010G076600--Sobic001G209800 Sobic010G076600--Sobic001G476400 Sobic010G076600--Sobic001G473900 Sobic009G217600 Sobic009G217600 Sobic010G076600--Sobic009G217600 Sobic003G338900 Sobic003G338900 Sobic010G076600--Sobic003G338900 Sobic008G036000 Sobic008G036000 Sobic010G076600--Sobic008G036000 Sobic010G076600--Sobic006G095600 Sobic003G296700 Sobic003G296700 Sobic010G076600--Sobic003G296700 Sobic002G203000--Sobic001G077700 Sobic002G203000--Sobic009G071800 Sobic002G203000--Sobic006G095600 Sobic002G203000--Sobic001G489600 Sobic010G076700 Sobic010G076700 Sobic002G203000--Sobic010G076700 Sobic009G258300 Sobic009G258300 Sobic002G203000--Sobic009G258300 Sobic002G203000--Sobic001G473900 Sobic007G057100 Sobic007G057100 Sobic002G203000--Sobic007G057100 Sobic002G203000--Sobic002G248100 Sobic009G071800--Sobic001G077700 Sobic009G071800--Sobic002G203000 Sobic010G234600 Sobic010G234600 Sobic009G071800--Sobic010G234600 Sobic009G071800--Sobic002G248100 Sobic002G294700 Sobic002G294700 Sobic009G071800--Sobic002G294700 Sobic009G071800--Sobic010G076700 Sobic001G398500 Sobic001G398500 Sobic009G071800--Sobic001G398500 Sobic009G071800--Sobic001G473900 Sobic009G071800--Sobic006G095600 Sobic001G077700--Sobic009G071800 Sobic001G077700--Sobic010G234600 Sobic001G077700--Sobic002G203000 Sobic001G077700--Sobic002G248100 Sobic001G077700--Sobic002G294700 Sobic008G177800 Sobic008G177800 Sobic001G077700--Sobic008G177800 Sobic004G286600 Sobic004G286600 Sobic001G077700--Sobic004G286600 Sobic010G234700 Sobic010G234700 Sobic001G077700--Sobic010G234700 Sobic001G077700--Sobic001G489600 Sobic006G095600--Sobic001G489600 Sobic006G095600--Sobic002G203000 Sobic006G095600--Sobic001G051600 Sobic006G095600--Sobic001G077700 Sobic006G095600--Sobic009G071800 Sobic006G095600--Sobic007G057100 Sobic004G084100 Sobic004G084100 Sobic006G095600--Sobic004G084100 Sobic006G095600--Sobic001G473900 Sobic006G095600--Sobic001G476400 Sobic001G077400 Sobic001G077400 Sobic001G209800--Sobic001G077400 Sobic004G280900 Sobic004G280900 Sobic001G209800--Sobic004G280900 Sobic001G209800--Sobic009G217600 Sobic001G035000 Sobic001G035000 Sobic001G209800--Sobic001G035000 Sobic005G037000 Sobic005G037000 Sobic001G209800--Sobic005G037000 Sobic001G441100 Sobic001G441100 Sobic001G209800--Sobic001G441100 Sobic001G209800--Sobic010G076600 Sobic001G341600 Sobic001G341600 Sobic001G209800--Sobic001G341600 Sobic006G274300 Sobic006G274300 Sobic001G209800--Sobic006G274300 Sobic003G268700--Sobic009G071800 Sobic003G268700--Sobic008G036000 Sobic003G012800 Sobic003G012800 Sobic003G268700--Sobic003G012800 Sobic009G167000 Sobic009G167000 Sobic003G268700--Sobic009G167000 Sobic003G268700--Sobic001G209800 Sobic003G268700--Sobic001G473900 Sobic002G217100 Sobic002G217100 Sobic003G268700--Sobic002G217100 Sobic003G268700--Sobic010G076600 Sobic003G268700--Sobic001G077700 Sobic002G248100--Sobic001G077700 Sobic002G248100--Sobic008G177800 Sobic002G248100--Sobic010G234600 Sobic002G248100--Sobic002G294700 Sobic002G248100--Sobic009G071800 Sobic002G248100--Sobic004G286600 Sobic002G248100--Sobic002G203000 Sobic009G255500 Sobic009G255500 Sobic002G248100--Sobic009G255500 Sobic006G231100 Sobic006G231100 Sobic002G248100--Sobic006G231100
Octagon: transcription factors


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