Gene annotation
| Transcriptome id | Sobic.002G203000.1 |
|---|---|
| Synonym | SbCIPK16, SnRK3.24,CBL-interacting protein kinases, CIPK5, Sb02g024770 |
| Functional annotation | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543) Interacting factor of CBLs (PubMedID : 19860013) CAMK_KIN1/SNF1/Nim1_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed |
| UniProt | C4P7S3 |
| Pfam | PF14531 PF03822 |
| Panther DB | PTHR24347 PTHR24347:SF202 |
| NCBI CDD | KOG0583; Serine/threonine protein kinase |
| KEGG Orthology | - |
| Gene Ontology | GO:0007165; signal transduction |
Orthologs (automatic annotation)
| TAIR | AT5G10930 : CBL-interacting protein kinase 5 |
|---|---|
| RAP-DB (Rice) | LOC_Os09g25090.1 : CAMK_KIN1/SNF1/Nim1_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed |
| MaizeGDB (Corn) | Zm00025a013904 , Zm00025a047003 , Zm00025a049149 |
| Brachypodium | PNT64583 , PNT64582 , KQJ90256 , KQJ90254 , KQJ90255 , KQK03244 |
| Barley | HORVU3Hr1G025810.1 , HORVU5Hr1G065370.1 , HORVU5Hr1G065370.2 |
| Wheat | TraesCS2B02G398900 , TraesCS2D02G378100 , TraesCS2A02G381600 |
| Populus | - |
JBrowse
| Sobic.002G203000 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G077700 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 2 | Sobic.009G071800 | 6-phosphofructokinase, putative, expressed | K00850: pfkA, 6-phosphofructokinase 1 |
| 3 | Sobic.006G095600 | lipoxygenase (LOX) that catalyzes the first committed step of JA biosynthesis(PubMedID : 31597271)@lipoxygenase protein, putative, expressed | K00454: lipoxygenase |
| 4 | Sobic.001G489600 | expressed protein | - |
| 5 | Sobic.010G076700 | expressed protein | - |
| 6 | Sobic.009G258300 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by BR treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed | - |
| 7 | Sobic.001G473900 | Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed | K09286: EREBP-like factor |
| 8 | Sobic.007G057100 | expressed protein | - |
| 9 | Sobic.002G248100 | expressed protein | - |
| 10 | Sobic.001G051600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATPase, putative, expressed | - |
| 11 | Sobic.001G476400 | - | - |
| 12 | Sobic.002G294700 | Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed | - |
| 13 | Sobic.004G283300 | AP2 domain containing protein, expressed | - |
| 14 | Sobic.001G081600 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed | - |
| 15 | Sobic.001G290400 | no apical meristem protein, putative, expressed | - |
| 16 | Sobic.009G231400 | Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@dnaJ domain containing protein, expressed | K09510: DnaJ homolog subfamily B member 4 |
| 17 | Sobic.004G084100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 18 | Sobic.004G286600 | Protecting the plants under varied stress situations(PubMedID : 26536883)@dehydrin, putative, expressed | - |
| 19 | Sobic.004G025000 | CAMK_CAMK_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | K13412: calcium-dependent protein kinase |
| 20 | Sobic.002G276400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tyrosine protein kinase domain containing protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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