Gene annotation
| Transcriptome id | Sobic.009G258300.1 |
|---|---|
| Synonym | SbLBD34, lateral organ boundaries, Sb09g030780, LBD40 |
| Functional annotation | "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by BR treatment" (PubMedID : 20499123) DUF260 domain containing protein, putative, expressed |
| UniProt | A0A1B6PAI1 |
| Pfam | PF03195 |
| Panther DB | PTHR31304 PTHR31304:SF3 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT3G02550 : LOB domain-containing protein 41 |
|---|---|
| RAP-DB (Rice) | LOC_Os01g32770.1 : DUF260 domain containing protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a044237 , Zm00025a023631 , Zm00025a037950 , Zm00025a002858 |
| Brachypodium | KQJ88280 , KQJ88281 |
| Barley | HORVU2Hr1G066080.1 , HORVU2Hr1G066080.2 , HORVU4Hr1G086700.1 , HORVU3Hr1G016320.1 |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.009G258300 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G203000 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | - |
| 2 | Sobic.003G293600 | -(PubMedID : 34525227)@beta,beta-carotene 9,10-dioxygenase, putative, expressed | K17913: carlactone synthase / all-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase |
| 3 | Sobic.004G283300 | AP2 domain containing protein, expressed | - |
| 4 | Sobic.010G076700 | expressed protein | - |
| 5 | Sobic.004G278200 | DUF581 domain containing protein, expressed | - |
| 6 | Sobic.001G063600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | K13412: calcium-dependent protein kinase |
| 7 | Sobic.009G170100 | DUF640 domain containing protein, putative, expressed | - |
| 8 | Sobic.001G051600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATPase, putative, expressed | - |
| 9 | Sobic.007G057100 | expressed protein | - |
| 10 | Sobic.006G095600 | lipoxygenase (LOX) that catalyzes the first committed step of JA biosynthesis(PubMedID : 31597271)@lipoxygenase protein, putative, expressed | K00454: lipoxygenase |
| 11 | Sobic.001G153700 | zinc finger, C3HC4 type domain containing protein, expressed | - |
| 12 | Sobic.001G077700 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 13 | Sobic.005G231700 | ZOS7-01 - C2H2 zinc finger protein, expressed | - |
| 14 | Sobic.001G489600 | expressed protein | - |
| 15 | Sobic.001G476400 | - | - |
| 16 | Sobic.001G473900 | Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed | K09286: EREBP-like factor |
| 17 | Sobic.006G216500 | "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 18 | Sobic.002G344700 | remorin, putative, expressed | - |
| 19 | Sobic.006G184800 | "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@dehydration-responsive element-binding protein, putative, expressed | - |
| 20 | Sobic.007G101800 | pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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