Gene annotation
Transcriptome id Sobic.001G153700.1
Synonym ATL5, Sb01g013350
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5WR50
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF169
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G62690 : AtL5
RAP-DB (Rice) LOC_Os03g44642.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a007236
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G258300 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by BR treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
2 Sobic.006G216500 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.003G293600 -(PubMedID : 34525227)@beta,beta-carotene 9,10-dioxygenase, putative, expressed K17913: carlactone synthase / all-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase
4 Sobic.006G184800 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@dehydration-responsive element-binding protein, putative, expressed -
5 Sobic.002G203000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
6 Sobic.001G051600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATPase, putative, expressed -
7 Sobic.001G092600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
8 Sobic.006G005600 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@heat shock protein, putative, expressed K04079: HSP90A, molecular chaperone HtpG
9 Sobic.004G283300 AP2 domain containing protein, expressed -
10 Sobic.010G076700 expressed protein -
11 Sobic.004G321000 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
12 Sobic.009G163900 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
13 Sobic.007G057100 expressed protein -
14 Sobic.004G278200 DUF581 domain containing protein, expressed -
15 Sobic.006G095600 lipoxygenase (LOX) that catalyzes the first committed step of JA biosynthesis(PubMedID : 31597271)@lipoxygenase protein, putative, expressed K00454: lipoxygenase
16 Sobic.009G231400 Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@dnaJ domain containing protein, expressed K09510: DnaJ homolog subfamily B member 4
17 Sobic.001G476400 - -
18 Sobic.001G077700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.001G489600 expressed protein -
20 Sobic.001G473900 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor


Gene co-expression network
sample Sobic001G153700 Sobic001G153700 Sobic009G258300 Sobic009G258300 Sobic001G153700--Sobic009G258300 Sobic006G216500 Sobic006G216500 Sobic001G153700--Sobic006G216500 Sobic003G293600 Sobic003G293600 Sobic001G153700--Sobic003G293600 Sobic006G184800 Sobic006G184800 Sobic001G153700--Sobic006G184800 Sobic002G203000 Sobic002G203000 Sobic001G153700--Sobic002G203000 Sobic001G051600 Sobic001G051600 Sobic001G153700--Sobic001G051600 Sobic001G092600 Sobic001G092600 Sobic001G153700--Sobic001G092600 Sobic006G005600 Sobic006G005600 Sobic001G153700--Sobic006G005600 Sobic004G283300 Sobic004G283300 Sobic001G153700--Sobic004G283300 Sobic009G258300--Sobic002G203000 Sobic009G258300--Sobic003G293600 Sobic009G258300--Sobic004G283300 Sobic010G076700 Sobic010G076700 Sobic009G258300--Sobic010G076700 Sobic004G278200 Sobic004G278200 Sobic009G258300--Sobic004G278200 Sobic001G063600 Sobic001G063600 Sobic009G258300--Sobic001G063600 Sobic009G170100 Sobic009G170100 Sobic009G258300--Sobic009G170100 Sobic009G258300--Sobic001G051600 Sobic007G057100 Sobic007G057100 Sobic009G258300--Sobic007G057100 Sobic006G216500--Sobic004G283300 Sobic001G081600 Sobic001G081600 Sobic006G216500--Sobic001G081600 Sobic004G281200 Sobic004G281200 Sobic006G216500--Sobic004G281200 Sobic010G272000 Sobic010G272000 Sobic006G216500--Sobic010G272000 Sobic006G216500--Sobic006G184800 Sobic001G476400 Sobic001G476400 Sobic006G216500--Sobic001G476400 Sobic010G016500 Sobic010G016500 Sobic006G216500--Sobic010G016500 Sobic002G217100 Sobic002G217100 Sobic006G216500--Sobic002G217100 Sobic002G344700 Sobic002G344700 Sobic006G216500--Sobic002G344700 Sobic003G293600--Sobic009G258300 Sobic003G293600--Sobic004G278200 Sobic007G166900 Sobic007G166900 Sobic003G293600--Sobic007G166900 Sobic006G267900 Sobic006G267900 Sobic003G293600--Sobic006G267900 Sobic010G006700 Sobic010G006700 Sobic003G293600--Sobic010G006700 Sobic002G427400 Sobic002G427400 Sobic003G293600--Sobic002G427400 Sobic001G125100 Sobic001G125100 Sobic003G293600--Sobic001G125100 Sobic003G373150 Sobic003G373150 Sobic003G293600--Sobic003G373150 Sobic004G321000 Sobic004G321000 Sobic003G293600--Sobic004G321000 Sobic004G283201 Sobic004G283201 Sobic006G184800--Sobic004G283201 Sobic006G055600 Sobic006G055600 Sobic006G184800--Sobic006G055600 Sobic009G163900 Sobic009G163900 Sobic006G184800--Sobic009G163900 Sobic006G184800--Sobic001G092600 Sobic006G184800--Sobic006G005600 Sobic004G245850 Sobic004G245850 Sobic006G184800--Sobic004G245850 Sobic006G184800--Sobic001G476400 Sobic009G231400 Sobic009G231400 Sobic006G184800--Sobic009G231400 Sobic006G184800--Sobic004G283300 Sobic001G077700 Sobic001G077700 Sobic002G203000--Sobic001G077700 Sobic009G071800 Sobic009G071800 Sobic002G203000--Sobic009G071800 Sobic006G095600 Sobic006G095600 Sobic002G203000--Sobic006G095600 Sobic001G489600 Sobic001G489600 Sobic002G203000--Sobic001G489600 Sobic002G203000--Sobic010G076700 Sobic002G203000--Sobic009G258300 Sobic001G473900 Sobic001G473900 Sobic002G203000--Sobic001G473900 Sobic002G203000--Sobic007G057100 Sobic002G248100 Sobic002G248100 Sobic002G203000--Sobic002G248100 Sobic001G051600--Sobic001G489600 Sobic001G051600--Sobic001G476400 Sobic001G051600--Sobic006G095600 Sobic001G051600--Sobic002G203000 Sobic001G051600--Sobic007G057100 Sobic004G051166 Sobic004G051166 Sobic001G051600--Sobic004G051166 Sobic008G159100 Sobic008G159100 Sobic001G051600--Sobic008G159100 Sobic001G051600--Sobic001G081600 Sobic004G025000 Sobic004G025000 Sobic001G051600--Sobic004G025000 Sobic001G092600--Sobic006G005600 Sobic001G092600--Sobic006G055600 Sobic001G092600--Sobic009G163900 Sobic001G092600--Sobic004G283201 Sobic001G092600--Sobic006G184800 Sobic001G092600--Sobic009G231400 Sobic009G201500 Sobic009G201500 Sobic001G092600--Sobic009G201500 Sobic001G092600--Sobic003G373150 Sobic001G092600--Sobic004G321000 Sobic006G005600--Sobic006G055600 Sobic006G005600--Sobic001G092600 Sobic006G005600--Sobic004G283201 Sobic006G005600--Sobic009G201500 Sobic006G005600--Sobic009G163900 Sobic006G005600--Sobic006G184800 Sobic006G005600--Sobic003G373150 Sobic006G005600--Sobic004G283300 Sobic006G005600--Sobic004G278200 Sobic004G283300--Sobic002G344700 Sobic004G283300--Sobic010G016500 Sobic004G283300--Sobic001G081600 Sobic004G283300--Sobic004G283201 Sobic004G283300--Sobic009G170100 Sobic006G032200 Sobic006G032200 Sobic004G283300--Sobic006G032200 Sobic004G283300--Sobic004G281200 Sobic004G283300--Sobic001G476400 Sobic006G210300 Sobic006G210300 Sobic004G283300--Sobic006G210300
Octagon: transcription factors


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