Gene annotation
Transcriptome id Sobic.004G278200.1,Sobic.004G278200.2
Synonym Sb04g031510
Functional annotation DUF581 domain containing protein, expressed
UniProt C5Y0V2
Pfam PF04570
Panther DB PTHR33059 PTHR33059:SF29
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G47060 : Protein of unknown function (DUF581)
RAP-DB (Rice) LOC_Os02g46190.1 : DUF581 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a056704 , Zm00025a032349
Brachypodium -
Barley -
Wheat TraesCS6D02G242700 , TraesCS6A02G262000
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G373150 - -
2 Sobic.007G166900 auxin-induced protein 5NG4, putative, expressed -
3 Sobic.006G055600 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
4 Sobic.001G080300 peroxidase precursor, putative, expressed K00430: peroxidase
5 Sobic.002G427400 COBRA-like protein 7 precursor, putative, expressed -
6 Sobic.004G321000 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
7 Sobic.001G063600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
8 Sobic.003G032900 expressed protein -
9 Sobic.004G283201 - -
10 Sobic.009G163900 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
11 Sobic.010G006700 auxin-induced protein 5NG4, putative, expressed -
12 Sobic.006G005600 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@heat shock protein, putative, expressed K04079: HSP90A, molecular chaperone HtpG
13 Sobic.003G293600 -(PubMedID : 34525227)@beta,beta-carotene 9,10-dioxygenase, putative, expressed K17913: carlactone synthase / all-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase
14 Sobic.001G125100 pre-mRNA-splicing factor, putative, expressed K12817: PRPF18, pre-mRNA-splicing factor 18
15 Sobic.006G184800 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@dehydration-responsive element-binding protein, putative, expressed -
16 Sobic.009G258300 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by BR treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
17 Sobic.010G080400 AP2 domain containing protein, expressed -
18 Sobic.004G283300 AP2 domain containing protein, expressed -
19 Sobic.004G310600 Not investigated(PubMedID : 23766026)@transcription factor(PubMedID : 30367619)@AP2 domain containing protein, expressed -
20 Sobic.006G267900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic004G278200 Sobic004G278200 Sobic003G373150 Sobic003G373150 Sobic004G278200--Sobic003G373150 Sobic007G166900 Sobic007G166900 Sobic004G278200--Sobic007G166900 Sobic006G055600 Sobic006G055600 Sobic004G278200--Sobic006G055600 Sobic001G080300 Sobic001G080300 Sobic004G278200--Sobic001G080300 Sobic002G427400 Sobic002G427400 Sobic004G278200--Sobic002G427400 Sobic004G321000 Sobic004G321000 Sobic004G278200--Sobic004G321000 Sobic001G063600 Sobic001G063600 Sobic004G278200--Sobic001G063600 Sobic003G032900 Sobic003G032900 Sobic004G278200--Sobic003G032900 Sobic004G283201 Sobic004G283201 Sobic004G278200--Sobic004G283201 Sobic004G310600 Sobic004G310600 Sobic003G373150--Sobic004G310600 Sobic001G125100 Sobic001G125100 Sobic003G373150--Sobic001G125100 Sobic009G000700 Sobic009G000700 Sobic003G373150--Sobic009G000700 Sobic010G006700 Sobic010G006700 Sobic003G373150--Sobic010G006700 Sobic003G373150--Sobic004G283201 Sobic003G078501 Sobic003G078501 Sobic003G373150--Sobic003G078501 Sobic003G373150--Sobic006G055600 Sobic006G267900 Sobic006G267900 Sobic003G373150--Sobic006G267900 Sobic003G373150--Sobic004G278200 Sobic007G166900--Sobic010G006700 Sobic007G166900--Sobic002G427400 Sobic004G331300 Sobic004G331300 Sobic007G166900--Sobic004G331300 Sobic007G166900--Sobic003G373150 Sobic007G166900--Sobic004G310600 Sobic007G166900--Sobic006G267900 Sobic001G159850 Sobic001G159850 Sobic007G166900--Sobic001G159850 Sobic006G055600--Sobic004G283201 Sobic006G005600 Sobic006G005600 Sobic006G055600--Sobic006G005600 Sobic001G092600 Sobic001G092600 Sobic006G055600--Sobic001G092600 Sobic006G055600--Sobic003G373150 Sobic006G184800 Sobic006G184800 Sobic006G055600--Sobic006G184800 Sobic009G163900 Sobic009G163900 Sobic006G055600--Sobic009G163900 Sobic006G055600--Sobic004G321000 Sobic006G055600--Sobic004G278200 Sobic009G201500 Sobic009G201500 Sobic006G055600--Sobic009G201500 Sobic001G080300--Sobic002G427400 Sobic001G080300--Sobic004G278200 Sobic001G080300--Sobic007G166900 Sobic008G159100 Sobic008G159100 Sobic001G080300--Sobic008G159100 Sobic001G080300--Sobic003G032900 Sobic010G080400 Sobic010G080400 Sobic001G080300--Sobic010G080400 Sobic001G080300--Sobic001G063600 Sobic001G080300--Sobic003G373150 Sobic005G115800 Sobic005G115800 Sobic001G080300--Sobic005G115800 Sobic002G427400--Sobic007G166900 Sobic002G427400--Sobic001G080300 Sobic002G427400--Sobic008G159100 Sobic002G427400--Sobic004G278200 Sobic002G427400--Sobic003G373150 Sobic002G427400--Sobic010G006700 Sobic003G225900 Sobic003G225900 Sobic002G427400--Sobic003G225900 Sobic002G427400--Sobic003G032900 Sobic002G427400--Sobic006G267900 Sobic004G321000--Sobic006G055600 Sobic004G321000--Sobic009G163900 Sobic004G321000--Sobic004G278200 Sobic004G321000--Sobic003G373150 Sobic004G321000--Sobic006G005600 Sobic004G321000--Sobic001G092600 Sobic004G321000--Sobic009G201500 Sobic004G321000--Sobic004G283201 Sobic004G321000--Sobic006G184800 Sobic001G476400 Sobic001G476400 Sobic001G063600--Sobic001G476400 Sobic005G231700 Sobic005G231700 Sobic001G063600--Sobic005G231700 Sobic001G063600--Sobic010G080400 Sobic001G063600--Sobic008G159100 Sobic009G170100 Sobic009G170100 Sobic001G063600--Sobic009G170100 Sobic001G063600--Sobic003G032900 Sobic002G068800 Sobic002G068800 Sobic001G063600--Sobic002G068800 Sobic001G081600 Sobic001G081600 Sobic001G063600--Sobic001G081600 Sobic004G283300 Sobic004G283300 Sobic001G063600--Sobic004G283300 Sobic003G032900--Sobic001G063600 Sobic003G032900--Sobic004G278200 Sobic003G032900--Sobic002G427400 Sobic003G032900--Sobic008G159100 Sobic003G032900--Sobic001G080300 Sobic003G032900--Sobic001G476400 Sobic003G032900--Sobic003G373150 Sobic003G032900--Sobic010G080400 Sobic004G025000 Sobic004G025000 Sobic003G032900--Sobic004G025000 Sobic004G283201--Sobic006G055600 Sobic004G283201--Sobic006G005600 Sobic004G283201--Sobic003G373150 Sobic004G283201--Sobic006G184800 Sobic004G283201--Sobic001G092600 Sobic004G283201--Sobic004G283300 Sobic010G016500 Sobic010G016500 Sobic004G283201--Sobic010G016500 Sobic004G283201--Sobic001G125100 Sobic004G283201--Sobic009G201500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.