Gene annotation
Transcriptome id Sobic.002G427400.1
Synonym Sb02g043770, ATSEB1, SEB1, COBL7
Functional annotation COBRA-like protein 7 precursor, putative, expressed
UniProt A0A1W0W886
Pfam PF04833
Panther DB PTHR31052 PTHR31052:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016049; cell growth GO:0010215cellulose microfibril organization


Orthologs (automatic annotation)
TAIR AT4G16120 : COBRA-like protein-7 precursor
RAP-DB (Rice) LOC_Os03g18910.1 : COBRA-like protein 7 precursor, putative, expressed
MaizeGDB (Corn) Zm00025a015499 , Zm00025a048251
Brachypodium KQK14512
Barley HORVU2Hr1G015440.1 , HORVU7Hr1G028350.1 , HORVU0Hr1G030030.1
Wheat TraesCS7D02G136500 , TraesCS7A02G136600 , TraesCS7B02G037700 , TraesCS2A02G092900
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G166900 auxin-induced protein 5NG4, putative, expressed -
2 Sobic.001G080300 peroxidase precursor, putative, expressed K00430: peroxidase
3 Sobic.008G159100 similar to Calmodulin-2(PubMedID : 29862293)@Ca2+ sensors group(PubMedID : 30367619)@OsCML5 - Calmodulin-related calcium sensor protein, expressed K02183: calmodulin
4 Sobic.004G278200 DUF581 domain containing protein, expressed -
5 Sobic.003G373150 - -
6 Sobic.010G006700 auxin-induced protein 5NG4, putative, expressed -
7 Sobic.003G225900 expressed protein -
8 Sobic.003G032900 expressed protein -
9 Sobic.006G267900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
10 Sobic.003G078501 - -
11 Sobic.001G063600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
12 Sobic.004G310600 Not investigated(PubMedID : 23766026)@transcription factor(PubMedID : 30367619)@AP2 domain containing protein, expressed -
13 Sobic.005G115800 cytochrome P450, putative, expressed -
14 Sobic.004G331300 AP2 domain containing protein, expressed -
15 Sobic.001G125100 pre-mRNA-splicing factor, putative, expressed K12817: PRPF18, pre-mRNA-splicing factor 18
16 Sobic.004G245850 - -
17 Sobic.001G243000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heat stress transcription factor, putative, expressed K09419: heat shock transcription factor, other eukaryote
18 Sobic.003G367350 - -
19 Sobic.003G293600 -(PubMedID : 34525227)@beta,beta-carotene 9,10-dioxygenase, putative, expressed K17913: carlactone synthase / all-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase
20 Sobic.001G159850 - -


Gene co-expression network
sample Sobic002G427400 Sobic002G427400 Sobic007G166900 Sobic007G166900 Sobic002G427400--Sobic007G166900 Sobic001G080300 Sobic001G080300 Sobic002G427400--Sobic001G080300 Sobic008G159100 Sobic008G159100 Sobic002G427400--Sobic008G159100 Sobic004G278200 Sobic004G278200 Sobic002G427400--Sobic004G278200 Sobic003G373150 Sobic003G373150 Sobic002G427400--Sobic003G373150 Sobic010G006700 Sobic010G006700 Sobic002G427400--Sobic010G006700 Sobic003G225900 Sobic003G225900 Sobic002G427400--Sobic003G225900 Sobic003G032900 Sobic003G032900 Sobic002G427400--Sobic003G032900 Sobic006G267900 Sobic006G267900 Sobic002G427400--Sobic006G267900 Sobic007G166900--Sobic010G006700 Sobic007G166900--Sobic002G427400 Sobic004G331300 Sobic004G331300 Sobic007G166900--Sobic004G331300 Sobic007G166900--Sobic003G373150 Sobic004G310600 Sobic004G310600 Sobic007G166900--Sobic004G310600 Sobic007G166900--Sobic006G267900 Sobic001G159850 Sobic001G159850 Sobic007G166900--Sobic001G159850 Sobic001G080300--Sobic002G427400 Sobic001G080300--Sobic004G278200 Sobic001G080300--Sobic007G166900 Sobic001G080300--Sobic008G159100 Sobic001G080300--Sobic003G032900 Sobic010G080400 Sobic010G080400 Sobic001G080300--Sobic010G080400 Sobic001G063600 Sobic001G063600 Sobic001G080300--Sobic001G063600 Sobic001G080300--Sobic003G373150 Sobic005G115800 Sobic005G115800 Sobic001G080300--Sobic005G115800 Sobic008G159100--Sobic001G063600 Sobic008G159100--Sobic002G427400 Sobic008G000500 Sobic008G000500 Sobic008G159100--Sobic008G000500 Sobic001G051600 Sobic001G051600 Sobic008G159100--Sobic001G051600 Sobic001G476400 Sobic001G476400 Sobic008G159100--Sobic001G476400 Sobic004G264500 Sobic004G264500 Sobic008G159100--Sobic004G264500 Sobic005G231700 Sobic005G231700 Sobic008G159100--Sobic005G231700 Sobic004G245850 Sobic004G245850 Sobic008G159100--Sobic004G245850 Sobic008G159100--Sobic001G080300 Sobic004G278200--Sobic003G373150 Sobic004G278200--Sobic007G166900 Sobic006G055600 Sobic006G055600 Sobic004G278200--Sobic006G055600 Sobic004G278200--Sobic001G080300 Sobic004G278200--Sobic002G427400 Sobic004G321000 Sobic004G321000 Sobic004G278200--Sobic004G321000 Sobic004G278200--Sobic001G063600 Sobic004G278200--Sobic003G032900 Sobic004G283201 Sobic004G283201 Sobic004G278200--Sobic004G283201 Sobic003G373150--Sobic004G310600 Sobic001G125100 Sobic001G125100 Sobic003G373150--Sobic001G125100 Sobic009G000700 Sobic009G000700 Sobic003G373150--Sobic009G000700 Sobic003G373150--Sobic010G006700 Sobic003G373150--Sobic004G283201 Sobic003G078501 Sobic003G078501 Sobic003G373150--Sobic003G078501 Sobic003G373150--Sobic006G055600 Sobic003G373150--Sobic006G267900 Sobic003G373150--Sobic004G278200 Sobic010G006700--Sobic004G331300 Sobic010G006700--Sobic003G078501 Sobic010G006700--Sobic009G000700 Sobic010G006700--Sobic001G159850 Sobic003G225900--Sobic006G267900 Sobic002G189000 Sobic002G189000 Sobic003G225900--Sobic002G189000 Sobic002G271100 Sobic002G271100 Sobic003G225900--Sobic002G271100 Sobic003G225900--Sobic002G427400 Sobic003G225900--Sobic003G373150 Sobic001G081600 Sobic001G081600 Sobic003G225900--Sobic001G081600 Sobic010G260300 Sobic010G260300 Sobic003G225900--Sobic010G260300 Sobic005G087800 Sobic005G087800 Sobic003G225900--Sobic005G087800 Sobic003G225900--Sobic004G283201 Sobic003G032900--Sobic001G063600 Sobic003G032900--Sobic004G278200 Sobic003G032900--Sobic002G427400 Sobic003G032900--Sobic008G159100 Sobic003G032900--Sobic001G080300 Sobic003G032900--Sobic001G476400 Sobic003G032900--Sobic003G373150 Sobic003G032900--Sobic010G080400 Sobic004G025000 Sobic004G025000 Sobic003G032900--Sobic004G025000 Sobic006G267900--Sobic009G000700 Sobic006G267900--Sobic010G006700 Sobic006G267900--Sobic004G310600 Sobic006G267900--Sobic003G078501 Sobic006G267900--Sobic001G125100 Sobic004G155150 Sobic004G155150 Sobic006G267900--Sobic004G155150 Sobic006G267900--Sobic003G373150 Sobic003G367350 Sobic003G367350 Sobic006G267900--Sobic003G367350 Sobic006G267900--Sobic004G331300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.