Gene annotation
| Transcriptome id | Sobic.008G159100.1 |
|---|---|
| Synonym | calmodulin-like (CMLs) and calmodulin protein, CML11, Sb08g020710 |
| Functional annotation | similar to Calmodulin-2 (PubMedID : 29862293) Ca2+ sensors group (PubMedID : 30367619) OsCML5 - Calmodulin-related calcium sensor protein, expressed |
| UniProt | C5YRF9 |
| Pfam | PF13499 |
| Panther DB | PTHR23050 |
| NCBI CDD | KOG0027; Calmodulin and related proteins (EF-Hand superfamily) |
| KEGG Orthology | K02183; calmodulin |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT1G66410 : calmodulin 4 |
|---|---|
| RAP-DB (Rice) | LOC_Os12g41110.1 : OsCML5 - Calmodulin-related calcium sensor protein, expressed |
| MaizeGDB (Corn) | Zm00025a025299 |
| Brachypodium | - |
| Barley | HORVU5Hr1G014070.2 , HORVU5Hr1G014070.1 , HORVU2Hr1G016740.4 , HORVU2Hr1G016740.5 , HORVU2Hr1G016740.6 , HORVU2Hr1G016740.1 , HORVU2Hr1G016740.3 |
| Wheat | TraesCS2A02G098100 , TraesCS1D02G308100 , TraesCS2D02G097500 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G063600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | K13412: calcium-dependent protein kinase |
| 2 | Sobic.002G427400 | COBRA-like protein 7 precursor, putative, expressed | - |
| 3 | Sobic.008G000500 | exo70 exocyst complex subunit domain containing protein, expressed | - |
| 4 | Sobic.001G051600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATPase, putative, expressed | - |
| 5 | Sobic.001G476400 | - | - |
| 6 | Sobic.004G264500 | DUF617 domain containing protein, expressed | - |
| 7 | Sobic.005G231700 | ZOS7-01 - C2H2 zinc finger protein, expressed | - |
| 8 | Sobic.004G245850 | - | - |
| 9 | Sobic.001G080300 | peroxidase precursor, putative, expressed | K00430: peroxidase |
| 10 | Sobic.010G080400 | AP2 domain containing protein, expressed | - |
| 11 | Sobic.003G032900 | expressed protein | - |
| 12 | Sobic.004G278200 | DUF581 domain containing protein, expressed | - |
| 13 | Sobic.004G025000 | CAMK_CAMK_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | K13412: calcium-dependent protein kinase |
| 14 | Sobic.007G166900 | auxin-induced protein 5NG4, putative, expressed | - |
| 15 | Sobic.002G337800 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@MYB family transcription factor, putative, expressed | K09422: transcription factor MYB, plant |
| 16 | Sobic.007G057100 | expressed protein | - |
| 17 | Sobic.009G258300 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by BR treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed | - |
| 18 | Sobic.003G296700 | protein kinase domain containing protein, expressed | - |
| 19 | Sobic.006G095600 | lipoxygenase (LOX) that catalyzes the first committed step of JA biosynthesis(PubMedID : 31597271)@lipoxygenase protein, putative, expressed | K00454: lipoxygenase |
| 20 | Sobic.006G184800 | "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@dehydration-responsive element-binding protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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