Gene annotation
Transcriptome id Sobic.001G063600.1
Synonym CPK1, ATCPK1, Sb01g005780
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
UniProt C5WY52
Pfam PF13499 PF07714
Panther DB PTHR24349 PTHR24349:SF161
NCBI CDD KOG0032; Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily
KEGG Orthology K13412; calcium-dependent protein kinase
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT5G04870 : calcium dependent protein kinase 1
RAP-DB (Rice) LOC_Os03g57450.1 : CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
MaizeGDB (Corn) Zm00025a027150 , Zm00025a024833 , Zm00025a041347 , Zm00025a025734 , Zm00025a012860 , Zm00025a037842 , Zm00025a016615 , Zm00025a008488 , Zm00025a054043
Brachypodium KQK16018 , KQK16017 , KQK16016 , KQJ91880 , KQK12836 , KQJ86709 , KQJ89539 , PNT73998 , PNT73999
Barley HORVU4Hr1G026640.1 , HORVU4Hr1G026640.5 , HORVU6Hr1G094990.7 , HORVU6Hr1G094990.5 , HORVU1Hr1G068240.2 , HORVU6Hr1G094990.8 , HORVU0Hr1G032220.2 , HORVU0Hr1G032220.1 , HORVU1Hr1G068240.1 , HORVU6Hr1G094990.6 , HORVU6Hr1G094990.4 , HORVU6Hr1G094990.3 , HORVU6Hr1G094990.2 , HORVU6Hr1G094990.1 , HORVU4Hr1G026640.4
Wheat TraesCS5B02G428700 , TraesCS1B02G320400 , TraesCS5D02G434500 , TraesCS4A02G187900 , TraesCS4D02G125500 , TraesCS3A02G334200 , TraesCS5A02G426800 , TraesCS5A02G426800 , TraesCS2D02G456400 , TraesCS5A02G107900 , TraesCS5A02G107900 , TraesCS5A02G107900 , TraesCS5A02G107900 , TraesCS5D02G434500 , TraesCS5B02G428400 , TraesCS5B02G428400 , TraesCS3B02G365200 , TraesCS5D02G122800 , TraesCS5B02G115400 , TraesCS5B02G115400 , TraesCS1A02G309400 , TraesCS1A02G309400 , TraesCS3D02G327700 , TraesCS3D02G327700 , TraesCS3D02G327700 , TraesCS5D02G122800 , TraesCS5D02G434800 , TraesCS5D02G434800 , TraesCS1D02G308800 , TraesCS1D02G308800 , TraesCS6A02G421000 , TraesCS5A02G426500 , TraesCS4B02G130300 , TraesCS5D02G122800 , TraesCS5D02G122800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G476400 - -
2 Sobic.005G231700 ZOS7-01 - C2H2 zinc finger protein, expressed -
3 Sobic.010G080400 AP2 domain containing protein, expressed -
4 Sobic.008G159100 similar to Calmodulin-2(PubMedID : 29862293)@Ca2+ sensors group(PubMedID : 30367619)@OsCML5 - Calmodulin-related calcium sensor protein, expressed K02183: calmodulin
5 Sobic.009G170100 DUF640 domain containing protein, putative, expressed -
6 Sobic.003G032900 expressed protein -
7 Sobic.002G068800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@galactosyltransferase family protein, putative, expressed -
8 Sobic.001G081600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
9 Sobic.004G283300 AP2 domain containing protein, expressed -
10 Sobic.004G278200 DUF581 domain containing protein, expressed -
11 Sobic.004G025000 CAMK_CAMK_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
12 Sobic.001G051600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATPase, putative, expressed -
13 Sobic.001G473900 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
14 Sobic.009G258300 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by BR treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
15 Sobic.001G050800 galactosyltransferase family protein, putative, expressed -
16 Sobic.006G087900 TKL_IRAK_CR4L.3 - The CR4L subfamily has homology with Crinkly4, expressed -
17 Sobic.010G076600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Serine/threonine-protein kinase RIPK(PubMedID : 31721651)@tyrosine protein kinase domain containing protein, putative, expressed -
18 Sobic.006G032200 heavy metal-associated domain containing protein, expressed -
19 Sobic.003G342600 DUF640 domain containing protein, putative, expressed -
20 Sobic.010G076700 expressed protein -


Gene co-expression network
sample Sobic001G063600 Sobic001G063600 Sobic001G476400 Sobic001G476400 Sobic001G063600--Sobic001G476400 Sobic005G231700 Sobic005G231700 Sobic001G063600--Sobic005G231700 Sobic010G080400 Sobic010G080400 Sobic001G063600--Sobic010G080400 Sobic008G159100 Sobic008G159100 Sobic001G063600--Sobic008G159100 Sobic009G170100 Sobic009G170100 Sobic001G063600--Sobic009G170100 Sobic003G032900 Sobic003G032900 Sobic001G063600--Sobic003G032900 Sobic002G068800 Sobic002G068800 Sobic001G063600--Sobic002G068800 Sobic001G081600 Sobic001G081600 Sobic001G063600--Sobic001G081600 Sobic004G283300 Sobic004G283300 Sobic001G063600--Sobic004G283300 Sobic001G476400--Sobic001G063600 Sobic001G051600 Sobic001G051600 Sobic001G476400--Sobic001G051600 Sobic001G473900 Sobic001G473900 Sobic001G476400--Sobic001G473900 Sobic010G076600 Sobic010G076600 Sobic001G476400--Sobic010G076600 Sobic001G476400--Sobic001G081600 Sobic001G476400--Sobic010G080400 Sobic006G095600 Sobic006G095600 Sobic001G476400--Sobic006G095600 Sobic001G476400--Sobic004G283300 Sobic001G489600 Sobic001G489600 Sobic001G476400--Sobic001G489600 Sobic006G087900 Sobic006G087900 Sobic005G231700--Sobic006G087900 Sobic005G231700--Sobic001G063600 Sobic002G325900 Sobic002G325900 Sobic005G231700--Sobic002G325900 Sobic003G296700 Sobic003G296700 Sobic005G231700--Sobic003G296700 Sobic005G231700--Sobic010G080400 Sobic009G208800 Sobic009G208800 Sobic005G231700--Sobic009G208800 Sobic005G231700--Sobic008G159100 Sobic002G337800 Sobic002G337800 Sobic005G231700--Sobic002G337800 Sobic004G025000 Sobic004G025000 Sobic005G231700--Sobic004G025000 Sobic010G080400--Sobic001G063600 Sobic010G080400--Sobic001G476400 Sobic010G080400--Sobic010G076600 Sobic010G080400--Sobic005G231700 Sobic010G080400--Sobic003G296700 Sobic004G278200 Sobic004G278200 Sobic010G080400--Sobic004G278200 Sobic010G080400--Sobic008G159100 Sobic010G080400--Sobic006G087900 Sobic001G080300 Sobic001G080300 Sobic010G080400--Sobic001G080300 Sobic008G159100--Sobic001G063600 Sobic002G427400 Sobic002G427400 Sobic008G159100--Sobic002G427400 Sobic008G000500 Sobic008G000500 Sobic008G159100--Sobic008G000500 Sobic008G159100--Sobic001G051600 Sobic008G159100--Sobic001G476400 Sobic004G264500 Sobic004G264500 Sobic008G159100--Sobic004G264500 Sobic008G159100--Sobic005G231700 Sobic004G245850 Sobic004G245850 Sobic008G159100--Sobic004G245850 Sobic008G159100--Sobic001G080300 Sobic006G032200 Sobic006G032200 Sobic009G170100--Sobic006G032200 Sobic009G170100--Sobic004G283300 Sobic001G050800 Sobic001G050800 Sobic009G170100--Sobic001G050800 Sobic004G281200 Sobic004G281200 Sobic009G170100--Sobic004G281200 Sobic009G170100--Sobic001G081600 Sobic009G170100--Sobic001G063600 Sobic003G342600 Sobic003G342600 Sobic009G170100--Sobic003G342600 Sobic002G344700 Sobic002G344700 Sobic009G170100--Sobic002G344700 Sobic010G016500 Sobic010G016500 Sobic009G170100--Sobic010G016500 Sobic003G032900--Sobic001G063600 Sobic003G032900--Sobic004G278200 Sobic003G032900--Sobic002G427400 Sobic003G032900--Sobic008G159100 Sobic003G032900--Sobic001G080300 Sobic003G032900--Sobic001G476400 Sobic003G373150 Sobic003G373150 Sobic003G032900--Sobic003G373150 Sobic003G032900--Sobic010G080400 Sobic003G032900--Sobic004G025000 Sobic002G068800--Sobic001G063600 Sobic001G157400 Sobic001G157400 Sobic002G068800--Sobic001G157400 Sobic002G068800--Sobic001G050800 Sobic002G068800--Sobic009G170100 Sobic002G068800--Sobic001G081600 Sobic002G197600 Sobic002G197600 Sobic002G068800--Sobic002G197600 Sobic010G272101 Sobic010G272101 Sobic002G068800--Sobic010G272101 Sobic002G068800--Sobic001G476400 Sobic002G068800--Sobic004G281200 Sobic001G462800 Sobic001G462800 Sobic001G081600--Sobic001G462800 Sobic002G217100 Sobic002G217100 Sobic001G081600--Sobic002G217100 Sobic006G210300 Sobic006G210300 Sobic001G081600--Sobic006G210300 Sobic001G081600--Sobic004G283300 Sobic001G081600--Sobic002G197600 Sobic001G081600--Sobic004G281200 Sobic001G081600--Sobic002G344700 Sobic001G081600--Sobic004G025000 Sobic001G081600--Sobic001G476400 Sobic004G283300--Sobic002G344700 Sobic004G283300--Sobic010G016500 Sobic004G283300--Sobic001G081600 Sobic004G283201 Sobic004G283201 Sobic004G283300--Sobic004G283201 Sobic004G283300--Sobic009G170100 Sobic004G283300--Sobic006G032200 Sobic004G283300--Sobic004G281200 Sobic004G283300--Sobic001G476400 Sobic004G283300--Sobic006G210300
Octagon: transcription factors


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