Gene annotation
Transcriptome id Sobic.006G087900.1
Synonym CCR4, Sb06g017350
Functional annotation TKL_IRAK_CR4L.3 - The CR4L subfamily has homology with Crinkly4, expressed
UniProt C5Y8T0
Pfam PF13540 PF00069
Panther DB PTHR27003 PTHR27003:SF38
NCBI CDD KOG1187; Serine/threonine protein kinase
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT5G47850 : CRINKLY4 related 4
RAP-DB (Rice) LOC_Os04g35890.1 : TKL_IRAK_CR4L.3 - The CR4L subfamily has homology with Crinkly4, expressed
MaizeGDB (Corn) Zm00025a040722 , Zm00025a016933 , Zm00025a029688 , Zm00025a019136 , Zm00025a044046 , Zm00025a038864 , Zm00025a012726 , Zm00025a038178 , Zm00025a023581 , Zm00025a011296
Brachypodium KQK07880 , KQJ82756 , PNT66505 , PNT72611 , KQK02561 , KQK07298 , PNT62316 , KQK11777 , KQJ90669 , KQJ88913
Barley HORVU3Hr1G022780.2 , HORVU3Hr1G022780.3 , HORVU3Hr1G022780.6 , HORVU3Hr1G022780.7 , HORVU3Hr1G022780.4 , HORVU3Hr1G022780.5 , HORVU3Hr1G022780.9 , HORVU1Hr1G075670.1 , HORVU1Hr1G075670.2 , HORVU1Hr1G075670.3 , HORVU7Hr1G020660.9 , HORVU7Hr1G020660.8 , HORVU7Hr1G020660.7 , HORVU7Hr1G020660.6 , HORVU7Hr1G020660.5 , HORVU7Hr1G020660.3 , HORVU7Hr1G020660.1 , HORVU5Hr1G071340.4 , HORVU5Hr1G071340.5 , HORVU5Hr1G071340.1 , HORVU5Hr1G071340.2 , HORVU2Hr1G076720.1 , HORVU6Hr1G081330.2 , HORVU6Hr1G032540.4 , HORVU6Hr1G032540.5 , HORVU6Hr1G032540.6 , HORVU6Hr1G032540.7 , HORVU6Hr1G032540.1 , HORVU6Hr1G032540.2 , HORVU6Hr1G032540.3 , HORVU6Hr1G032540.8 , HORVU6Hr1G032540.9 , HORVU4Hr1G016080.1 , HORVU6Hr1G081330.4 , HORVU3Hr1G001390.1 , HORVU7Hr1G020660.12 , HORVU7Hr1G020660.11 , HORVU7Hr1G020660.10
Wheat TraesCS1A02G287900 , TraesCS1A02G287900 , TraesCS1A02G304200 , TraesCS6D02G316600 , TraesCS5D02G262400 , TraesCS7B02G133000 , TraesCS3A02G530200 , TraesCS3B02G192500 , TraesCS7D02G521200 , TraesCS3B02G600300 , TraesCS7B02G069100 , TraesCS7D02G318600 , TraesCS7D02G318600 , TraesCS5A02G254600 , TraesCS1D02G303700 , TraesCS3D02G535700 , TraesCS5B02G253700 , TraesCS3B02G141500 , TraesCS7A02G234800 , TraesCS6B02G367100 , TraesCS5B02G344100 , TraesCS7D02G165300 , TraesCS5D02G007100 , TraesCS5D02G007100 , TraesCS3A02G122300 , TraesCS5D02G007100 , TraesCS3A02G092300 , TraesCS3D02G124200 , TraesCS1B02G314700 , TraesCS1B02G297300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G231700 ZOS7-01 - C2H2 zinc finger protein, expressed -
2 Sobic.002G362900 IBS1, putative, expressed -
3 Sobic.003G296700 protein kinase domain containing protein, expressed -
4 Sobic.001G063600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
5 Sobic.006G076201 - -
6 Sobic.010G080400 AP2 domain containing protein, expressed -
7 Sobic.002G325900 aspartic proteinase nepenthesin precursor, putative, expressed -
8 Sobic.001G051800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsFBDUF18 - F-box and DUF domain containing protein, expressed -
9 Sobic.009G220200 exostosin family domain containing protein, expressed -
10 Sobic.003G278700 heavy metal-associated domain containing protein, expressed -
11 Sobic.006G064800 heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed -
12 Sobic.006G191100 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
13 Sobic.009G208800 hydrolase, acting on carbon-nitrogen, putative, expressed -
14 Sobic.002G337800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
15 Sobic.009G073000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsGrx_C15 - glutaredoxin subgroup III, expressed -
16 Sobic.004G172100 serine/threonine-protein kinase, putative, expressed -
17 Sobic.003G016600 GDSL-like lipase/acylhydrolase, putative, expressed -
18 Sobic.003G095400 glycosyltransferase protein, putative, expressed -
19 Sobic.004G145200 membrane attack complex component/perforin/complement C9, putative, expressed -
20 Sobic.010G272101 - -


Gene co-expression network
sample Sobic006G087900 Sobic006G087900 Sobic005G231700 Sobic005G231700 Sobic006G087900--Sobic005G231700 Sobic002G362900 Sobic002G362900 Sobic006G087900--Sobic002G362900 Sobic003G296700 Sobic003G296700 Sobic006G087900--Sobic003G296700 Sobic001G063600 Sobic001G063600 Sobic006G087900--Sobic001G063600 Sobic006G076201 Sobic006G076201 Sobic006G087900--Sobic006G076201 Sobic010G080400 Sobic010G080400 Sobic006G087900--Sobic010G080400 Sobic002G325900 Sobic002G325900 Sobic006G087900--Sobic002G325900 Sobic001G051800 Sobic001G051800 Sobic006G087900--Sobic001G051800 Sobic009G220200 Sobic009G220200 Sobic006G087900--Sobic009G220200 Sobic005G231700--Sobic006G087900 Sobic005G231700--Sobic001G063600 Sobic005G231700--Sobic002G325900 Sobic005G231700--Sobic003G296700 Sobic005G231700--Sobic010G080400 Sobic009G208800 Sobic009G208800 Sobic005G231700--Sobic009G208800 Sobic008G159100 Sobic008G159100 Sobic005G231700--Sobic008G159100 Sobic002G337800 Sobic002G337800 Sobic005G231700--Sobic002G337800 Sobic004G025000 Sobic004G025000 Sobic005G231700--Sobic004G025000 Sobic007G188100 Sobic007G188100 Sobic002G362900--Sobic007G188100 Sobic002G362900--Sobic006G087900 Sobic002G362900--Sobic009G220200 Sobic002G362900--Sobic009G208800 Sobic004G145200 Sobic004G145200 Sobic002G362900--Sobic004G145200 Sobic002G362900--Sobic005G231700 Sobic008G016900 Sobic008G016900 Sobic002G362900--Sobic008G016900 Sobic010G228000 Sobic010G228000 Sobic002G362900--Sobic010G228000 Sobic001G409900 Sobic001G409900 Sobic002G362900--Sobic001G409900 Sobic001G516600 Sobic001G516600 Sobic003G296700--Sobic001G516600 Sobic003G296700--Sobic009G208800 Sobic003G296700--Sobic009G220200 Sobic001G341600 Sobic001G341600 Sobic003G296700--Sobic001G341600 Sobic009G217600 Sobic009G217600 Sobic003G296700--Sobic009G217600 Sobic010G076600 Sobic010G076600 Sobic003G296700--Sobic010G076600 Sobic006G095600 Sobic006G095600 Sobic003G296700--Sobic006G095600 Sobic002G374100 Sobic002G374100 Sobic003G296700--Sobic002G374100 Sobic002G294700 Sobic002G294700 Sobic003G296700--Sobic002G294700 Sobic001G476400 Sobic001G476400 Sobic001G063600--Sobic001G476400 Sobic001G063600--Sobic005G231700 Sobic001G063600--Sobic010G080400 Sobic001G063600--Sobic008G159100 Sobic009G170100 Sobic009G170100 Sobic001G063600--Sobic009G170100 Sobic003G032900 Sobic003G032900 Sobic001G063600--Sobic003G032900 Sobic002G068800 Sobic002G068800 Sobic001G063600--Sobic002G068800 Sobic001G081600 Sobic001G081600 Sobic001G063600--Sobic001G081600 Sobic004G283300 Sobic004G283300 Sobic001G063600--Sobic004G283300 Sobic006G076201--Sobic006G087900 Sobic006G076201--Sobic004G145200 Sobic006G076201--Sobic002G325900 Sobic010G236500 Sobic010G236500 Sobic006G076201--Sobic010G236500 Sobic005G195600 Sobic005G195600 Sobic006G076201--Sobic005G195600 Sobic006G191100 Sobic006G191100 Sobic006G076201--Sobic006G191100 Sobic003G016600 Sobic003G016600 Sobic006G076201--Sobic003G016600 Sobic002G242500 Sobic002G242500 Sobic006G076201--Sobic002G242500 Sobic006G076201--Sobic002G362900 Sobic010G080400--Sobic001G063600 Sobic010G080400--Sobic001G476400 Sobic010G080400--Sobic010G076600 Sobic010G080400--Sobic005G231700 Sobic010G080400--Sobic003G296700 Sobic004G278200 Sobic004G278200 Sobic010G080400--Sobic004G278200 Sobic010G080400--Sobic008G159100 Sobic010G080400--Sobic006G087900 Sobic001G080300 Sobic001G080300 Sobic010G080400--Sobic001G080300 Sobic002G325900--Sobic005G231700 Sobic002G325900--Sobic006G087900 Sobic003G278700 Sobic003G278700 Sobic002G325900--Sobic003G278700 Sobic002G325900--Sobic001G063600 Sobic002G325900--Sobic006G076201 Sobic002G325900--Sobic010G080400 Sobic002G325900--Sobic003G016600 Sobic009G002400 Sobic009G002400 Sobic002G325900--Sobic009G002400 Sobic002G372800 Sobic002G372800 Sobic002G325900--Sobic002G372800 Sobic001G051800--Sobic009G220200 Sobic001G290400 Sobic001G290400 Sobic001G051800--Sobic001G290400 Sobic003G338900 Sobic003G338900 Sobic001G051800--Sobic003G338900 Sobic009G071800 Sobic009G071800 Sobic001G051800--Sobic009G071800 Sobic002G203000 Sobic002G203000 Sobic001G051800--Sobic002G203000 Sobic001G051800--Sobic003G296700 Sobic001G051800--Sobic009G208800 Sobic001G051800--Sobic002G294700 Sobic001G473900 Sobic001G473900 Sobic001G051800--Sobic001G473900 Sobic009G220200--Sobic009G208800 Sobic009G220200--Sobic003G296700 Sobic009G220200--Sobic001G051800 Sobic009G220200--Sobic001G516600 Sobic001G173300 Sobic001G173300 Sobic009G220200--Sobic001G173300 Sobic004G257300 Sobic004G257300 Sobic009G220200--Sobic004G257300 Sobic009G220200--Sobic002G374100 Sobic009G220200--Sobic002G362900 Sobic009G220200--Sobic007G188100
Octagon: transcription factors


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