Gene annotation
Transcriptome id Sobic.006G191100.1
Synonym Sb06g026440
Functional annotation tRNA-splicing endonuclease positive effector-related, putative, expressed
UniProt A0A1B6PMV6
Pfam PF04851 PF13087
Panther DB PTHR10887 PTHR10887:SF358
NCBI CDD KOG1801; tRNA-splicing endonuclease positive effector (SEN1)
KEGG Orthology K10706; SETX, senataxin
Gene Ontology GO:0016787; hydrolase activity GO:0005524ATP binding GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G65810 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os04g49320.1 : tRNA-splicing endonuclease positive effector-related, putative, expressed
MaizeGDB (Corn) Zm00025a056683
Brachypodium KQJ84197
Barley HORVU2Hr1G093810.11 , HORVU2Hr1G093810.10 , HORVU2Hr1G093810.9 , HORVU2Hr1G093810.8 , HORVU2Hr1G093810.7 , HORVU2Hr1G093810.6 , HORVU2Hr1G093810.5 , HORVU2Hr1G093810.4 , HORVU2Hr1G093810.3 , HORVU2Hr1G093810.2 , HORVU2Hr1G093810.1
Wheat TraesCS2B02G412100 , TraesCS2B02G412100 , TraesCS2B02G412100 , TraesCS2A02G394100 , TraesCS2D02G391900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G195600 adenylyl-sulfate kinase, putative, expressed K00860: adenylylsulfate kinase
2 Sobic.006G087900 TKL_IRAK_CR4L.3 - The CR4L subfamily has homology with Crinkly4, expressed -
3 Sobic.006G076201 - -
4 Sobic.002G362900 IBS1, putative, expressed -
5 Sobic.010G069900 cytochrome P450 72A1, putative, expressed K15639: CYP734A1, PHYB activation tagged suppressor 1
6 Sobic.003G016600 GDSL-like lipase/acylhydrolase, putative, expressed -
7 Sobic.003G227700 cytochrome P450 72A1, putative, expressed -
8 Sobic.001G113700 cytochrome b561, putative, expressed K08360: cytochrome b-561
9 Sobic.007G221100 GRAM and C2 domains containing protein, putative, expressed -
10 Sobic.004G145200 membrane attack complex component/perforin/complement C9, putative, expressed -
11 Sobic.007G137300 myb-like DNA-binding domain containing protein, expressed -
12 Sobic.005G092000 resistance protein, putative, expressed -
13 Sobic.010G192432 - K14431: transcription factor TGA
14 Sobic.005G017300 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
15 Sobic.006G075600 WD-40 repeat family protein, putative, expressed -
16 Sobic.001G342600 PDI, putative, expressed K17609: nucleoredoxin
17 Sobic.009G229300 glycosyltransferase family 43 protein, putative, expressed -
18 Sobic.001G012800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@regulatory protein, putative, expressed -
19 Sobic.006G064800 heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed -
20 Sobic.004G172100 serine/threonine-protein kinase, putative, expressed -


Gene co-expression network
sample Sobic006G191100 Sobic006G191100 Sobic005G195600 Sobic005G195600 Sobic006G191100--Sobic005G195600 Sobic006G087900 Sobic006G087900 Sobic006G191100--Sobic006G087900 Sobic006G076201 Sobic006G076201 Sobic006G191100--Sobic006G076201 Sobic002G362900 Sobic002G362900 Sobic006G191100--Sobic002G362900 Sobic010G069900 Sobic010G069900 Sobic006G191100--Sobic010G069900 Sobic003G016600 Sobic003G016600 Sobic006G191100--Sobic003G016600 Sobic003G227700 Sobic003G227700 Sobic006G191100--Sobic003G227700 Sobic001G113700 Sobic001G113700 Sobic006G191100--Sobic001G113700 Sobic007G221100 Sobic007G221100 Sobic006G191100--Sobic007G221100 Sobic005G195600--Sobic006G191100 Sobic005G195600--Sobic006G076201 Sobic006G064800 Sobic006G064800 Sobic005G195600--Sobic006G064800 Sobic005G195600--Sobic006G087900 Sobic003G278700 Sobic003G278700 Sobic005G195600--Sobic003G278700 Sobic002G325900 Sobic002G325900 Sobic005G195600--Sobic002G325900 Sobic004G172100 Sobic004G172100 Sobic005G195600--Sobic004G172100 Sobic004G145200 Sobic004G145200 Sobic005G195600--Sobic004G145200 Sobic007G225300 Sobic007G225300 Sobic005G195600--Sobic007G225300 Sobic005G231700 Sobic005G231700 Sobic006G087900--Sobic005G231700 Sobic006G087900--Sobic002G362900 Sobic003G296700 Sobic003G296700 Sobic006G087900--Sobic003G296700 Sobic001G063600 Sobic001G063600 Sobic006G087900--Sobic001G063600 Sobic006G087900--Sobic006G076201 Sobic010G080400 Sobic010G080400 Sobic006G087900--Sobic010G080400 Sobic006G087900--Sobic002G325900 Sobic001G051800 Sobic001G051800 Sobic006G087900--Sobic001G051800 Sobic009G220200 Sobic009G220200 Sobic006G087900--Sobic009G220200 Sobic006G076201--Sobic006G087900 Sobic006G076201--Sobic004G145200 Sobic006G076201--Sobic002G325900 Sobic010G236500 Sobic010G236500 Sobic006G076201--Sobic010G236500 Sobic006G076201--Sobic005G195600 Sobic006G076201--Sobic006G191100 Sobic006G076201--Sobic003G016600 Sobic002G242500 Sobic002G242500 Sobic006G076201--Sobic002G242500 Sobic006G076201--Sobic002G362900 Sobic007G188100 Sobic007G188100 Sobic002G362900--Sobic007G188100 Sobic002G362900--Sobic006G087900 Sobic002G362900--Sobic009G220200 Sobic009G208800 Sobic009G208800 Sobic002G362900--Sobic009G208800 Sobic002G362900--Sobic004G145200 Sobic002G362900--Sobic005G231700 Sobic008G016900 Sobic008G016900 Sobic002G362900--Sobic008G016900 Sobic010G228000 Sobic010G228000 Sobic002G362900--Sobic010G228000 Sobic001G409900 Sobic001G409900 Sobic002G362900--Sobic001G409900 Sobic010G069900--Sobic003G227700 Sobic010G071400 Sobic010G071400 Sobic010G069900--Sobic010G071400 Sobic004G212300 Sobic004G212300 Sobic010G069900--Sobic004G212300 Sobic010G192432 Sobic010G192432 Sobic010G069900--Sobic010G192432 Sobic001G006201 Sobic001G006201 Sobic010G069900--Sobic001G006201 Sobic001G483600 Sobic001G483600 Sobic010G069900--Sobic001G483600 Sobic009G102600 Sobic009G102600 Sobic010G069900--Sobic009G102600 Sobic010G101900 Sobic010G101900 Sobic010G069900--Sobic010G101900 Sobic004G078800 Sobic004G078800 Sobic010G069900--Sobic004G078800 Sobic003G016600--Sobic006G087900 Sobic003G016600--Sobic006G076201 Sobic003G016600--Sobic006G191100 Sobic003G016600--Sobic002G325900 Sobic003G016600--Sobic010G069900 Sobic003G294400 Sobic003G294400 Sobic003G016600--Sobic003G294400 Sobic003G019700 Sobic003G019700 Sobic003G016600--Sobic003G019700 Sobic001G012800 Sobic001G012800 Sobic003G016600--Sobic001G012800 Sobic003G016600--Sobic002G362900 Sobic003G227700--Sobic010G069900 Sobic003G257400 Sobic003G257400 Sobic003G227700--Sobic003G257400 Sobic003G227700--Sobic010G071400 Sobic006G003100 Sobic006G003100 Sobic003G227700--Sobic006G003100 Sobic003G227700--Sobic001G006201 Sobic007G158800 Sobic007G158800 Sobic003G227700--Sobic007G158800 Sobic003G000100 Sobic003G000100 Sobic003G227700--Sobic003G000100 Sobic010G152400 Sobic010G152400 Sobic003G227700--Sobic010G152400 Sobic004G106100 Sobic004G106100 Sobic003G227700--Sobic004G106100 Sobic001G113700--Sobic009G220200 Sobic001G217000 Sobic001G217000 Sobic001G113700--Sobic001G217000 Sobic001G113700--Sobic001G051800 Sobic002G210300 Sobic002G210300 Sobic001G113700--Sobic002G210300 Sobic003G338900 Sobic003G338900 Sobic001G113700--Sobic003G338900 Sobic001G113700--Sobic009G208800 Sobic001G113700--Sobic005G231700 Sobic002G379400 Sobic002G379400 Sobic001G113700--Sobic002G379400 Sobic001G113700--Sobic003G296700 Sobic007G221100--Sobic002G242500 Sobic001G049200 Sobic001G049200 Sobic007G221100--Sobic001G049200 Sobic003G273700 Sobic003G273700 Sobic007G221100--Sobic003G273700 Sobic009G179200 Sobic009G179200 Sobic007G221100--Sobic009G179200 Sobic001G456100 Sobic001G456100 Sobic007G221100--Sobic001G456100 Sobic007G221100--Sobic010G192432 Sobic007G221100--Sobic006G191100 Sobic006G075600 Sobic006G075600 Sobic007G221100--Sobic006G075600 Sobic010G220600 Sobic010G220600 Sobic007G221100--Sobic010G220600
Octagon: transcription factors


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