Gene annotation
Transcriptome id Sobic.006G075600.2,Sobic.006G075600.1
Synonym Sb06g016295
Functional annotation WD-40 repeat family protein, putative, expressed
UniProt C5YGB5
Pfam PF00400
Panther DB PTHR14221 PTHR14221:SF8
NCBI CDD KOG0283; WD40 repeat-containing protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G53500 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os04g34080.1 : WD-40 repeat family protein, putative, expressed
MaizeGDB (Corn) Zm00025a056023 , Zm00025a011461
Brachypodium KQJ82574
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G161900 AMP-binding enzyme, putative, expressed K01895: ACSS1_2, acetyl-CoA synthetase
2 Sobic.003G287400 respiratory burst oxidase, putative, expressed K13447: respiratory burst oxidase
3 Sobic.003G017601 - -
4 Sobic.003G368000 OsFBT3 - F-box and tubby domain containing protein, expressed -
5 Sobic.003G045900 gibberellin 3-beta-dioxygenase 2-2, putative, expressed K04124: gibberellin 3beta-dioxygenase
6 Sobic.010G045400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@AMP-binding enzyme, putative, expressed K01897: ACSL, long-chain acyl-CoA synthetase
7 Sobic.008G037900 transcription factor, putative, expressed K14431: transcription factor TGA
8 Sobic.003G287450 - -
9 Sobic.007G221100 GRAM and C2 domains containing protein, putative, expressed -
10 Sobic.004G103400 verticillium wilt disease resistance protein, putative, expressed -
11 Sobic.006G191100 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
12 Sobic.010G192432 - K14431: transcription factor TGA
13 Sobic.001G460400 expressed protein -
14 Sobic.007G119800 ABC transporter, ATP-binding protein, putative, expressed -
15 Sobic.001G342000 expressed protein -
16 Sobic.010G192366 - -
17 Sobic.005G092000 resistance protein, putative, expressed -
18 Sobic.001G006201 - -
19 Sobic.008G191400 expressed protein -
20 Sobic.005G022200 XRN 5-3 exonuclease N-terminus family protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2


Gene co-expression network
sample Sobic006G075600 Sobic006G075600 Sobic004G161900 Sobic004G161900 Sobic006G075600--Sobic004G161900 Sobic003G287400 Sobic003G287400 Sobic006G075600--Sobic003G287400 Sobic003G017601 Sobic003G017601 Sobic006G075600--Sobic003G017601 Sobic003G368000 Sobic003G368000 Sobic006G075600--Sobic003G368000 Sobic003G045900 Sobic003G045900 Sobic006G075600--Sobic003G045900 Sobic010G045400 Sobic010G045400 Sobic006G075600--Sobic010G045400 Sobic008G037900 Sobic008G037900 Sobic006G075600--Sobic008G037900 Sobic003G287450 Sobic003G287450 Sobic006G075600--Sobic003G287450 Sobic007G221100 Sobic007G221100 Sobic006G075600--Sobic007G221100 Sobic004G161900--Sobic003G368000 Sobic004G161900--Sobic003G017601 Sobic004G161900--Sobic010G045400 Sobic004G161900--Sobic008G037900 Sobic001G460400 Sobic001G460400 Sobic004G161900--Sobic001G460400 Sobic001G218500 Sobic001G218500 Sobic004G161900--Sobic001G218500 Sobic003G079100 Sobic003G079100 Sobic004G161900--Sobic003G079100 Sobic002G383900 Sobic002G383900 Sobic004G161900--Sobic002G383900 Sobic003G020500 Sobic003G020500 Sobic004G161900--Sobic003G020500 Sobic003G287400--Sobic003G287450 Sobic003G287400--Sobic004G161900 Sobic005G134600 Sobic005G134600 Sobic003G287400--Sobic005G134600 Sobic004G312200 Sobic004G312200 Sobic003G287400--Sobic004G312200 Sobic003G287400--Sobic006G075600 Sobic001G503000 Sobic001G503000 Sobic003G287400--Sobic001G503000 Sobic004G323900 Sobic004G323900 Sobic003G287400--Sobic004G323900 Sobic003G287400--Sobic001G218500 Sobic007G119800 Sobic007G119800 Sobic003G287400--Sobic007G119800 Sobic003G017601--Sobic001G218500 Sobic001G342000 Sobic001G342000 Sobic003G017601--Sobic001G342000 Sobic002G183750 Sobic002G183750 Sobic003G017601--Sobic002G183750 Sobic002G111900 Sobic002G111900 Sobic003G017601--Sobic002G111900 Sobic003G017601--Sobic003G079100 Sobic010G213600 Sobic010G213600 Sobic003G017601--Sobic010G213600 Sobic003G017601--Sobic003G020500 Sobic005G223700 Sobic005G223700 Sobic003G017601--Sobic005G223700 Sobic005G175900 Sobic005G175900 Sobic003G017601--Sobic005G175900 Sobic003G368000--Sobic004G161900 Sobic003G368000--Sobic008G037900 Sobic003G099000 Sobic003G099000 Sobic003G368000--Sobic003G099000 Sobic003G368000--Sobic010G045400 Sobic003G368000--Sobic003G017601 Sobic010G097200 Sobic010G097200 Sobic003G368000--Sobic010G097200 Sobic010G191700 Sobic010G191700 Sobic003G368000--Sobic010G191700 Sobic003G368000--Sobic003G079100 Sobic002G391400 Sobic002G391400 Sobic003G368000--Sobic002G391400 Sobic009G095800 Sobic009G095800 Sobic003G045900--Sobic009G095800 Sobic003G007400 Sobic003G007400 Sobic003G045900--Sobic003G007400 Sobic010G268700 Sobic010G268700 Sobic003G045900--Sobic010G268700 Sobic008G010500 Sobic008G010500 Sobic003G045900--Sobic008G010500 Sobic005G206000 Sobic005G206000 Sobic003G045900--Sobic005G206000 Sobic003G161400 Sobic003G161400 Sobic003G045900--Sobic003G161400 Sobic003G045900--Sobic001G342000 Sobic006G097900 Sobic006G097900 Sobic003G045900--Sobic006G097900 Sobic003G255600 Sobic003G255600 Sobic003G045900--Sobic003G255600 Sobic010G045400--Sobic008G037900 Sobic010G045400--Sobic003G017601 Sobic010G045400--Sobic003G368000 Sobic010G045400--Sobic004G161900 Sobic006G230300 Sobic006G230300 Sobic010G045400--Sobic006G230300 Sobic001G299100 Sobic001G299100 Sobic010G045400--Sobic001G299100 Sobic008G191400 Sobic008G191400 Sobic010G045400--Sobic008G191400 Sobic010G045400--Sobic001G218500 Sobic010G045400--Sobic010G213600 Sobic008G037900--Sobic010G097200 Sobic007G220400 Sobic007G220400 Sobic008G037900--Sobic007G220400 Sobic006G205700 Sobic006G205700 Sobic008G037900--Sobic006G205700 Sobic008G037900--Sobic002G111900 Sobic010G241900 Sobic010G241900 Sobic008G037900--Sobic010G241900 Sobic009G065700 Sobic009G065700 Sobic008G037900--Sobic009G065700 Sobic003G441800 Sobic003G441800 Sobic008G037900--Sobic003G441800 Sobic003G167300 Sobic003G167300 Sobic008G037900--Sobic003G167300 Sobic008G037900--Sobic002G391400 Sobic002G259100 Sobic002G259100 Sobic003G287450--Sobic002G259100 Sobic003G287450--Sobic001G503000 Sobic005G115300 Sobic005G115300 Sobic003G287450--Sobic005G115300 Sobic003G287450--Sobic004G312200 Sobic006G009700 Sobic006G009700 Sobic003G287450--Sobic006G009700 Sobic005G071900 Sobic005G071900 Sobic003G287450--Sobic005G071900 Sobic003G287450--Sobic001G218500 Sobic004G312500 Sobic004G312500 Sobic003G287450--Sobic004G312500 Sobic003G287450--Sobic003G287400 Sobic002G242500 Sobic002G242500 Sobic007G221100--Sobic002G242500 Sobic001G049200 Sobic001G049200 Sobic007G221100--Sobic001G049200 Sobic003G273700 Sobic003G273700 Sobic007G221100--Sobic003G273700 Sobic009G179200 Sobic009G179200 Sobic007G221100--Sobic009G179200 Sobic001G456100 Sobic001G456100 Sobic007G221100--Sobic001G456100 Sobic010G192432 Sobic010G192432 Sobic007G221100--Sobic010G192432 Sobic006G191100 Sobic006G191100 Sobic007G221100--Sobic006G191100 Sobic007G221100--Sobic006G075600 Sobic010G220600 Sobic010G220600 Sobic007G221100--Sobic010G220600
Octagon: transcription factors


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