Gene annotation
Transcriptome id Sobic.001G460400.1,Sobic.001G460400.2
Synonym Sb01g043210
Functional annotation expressed protein
UniProt A0A1B6QPP5
Pfam PF07839
Panther DB PTHR33349 PTHR33349:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005516; calmodulin binding


Orthologs (automatic annotation)
TAIR AT5G39380 : Plant calmodulin-binding protein-related
RAP-DB (Rice) LOC_Os03g11290.1 : expressed protein
MaizeGDB (Corn) Zm00025a053104
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G360700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K13083: flavonoid 3',5'-hydroxylase
2 Sobic.001G067800 metal cation transporter, putative, expressed K07238: TC.ZIP, zupT, ZRT3, zinc transporter, ZIP family
3 Sobic.004G161900 AMP-binding enzyme, putative, expressed K01895: ACSS1_2, acetyl-CoA synthetase
4 Sobic.003G017601 - -
5 Sobic.002G207200 - -
6 Sobic.001G227850 - -
7 Sobic.009G246700 CAS1 domain-containing protein 1 precursor, putative, expressed -
8 Sobic.008G037900 transcription factor, putative, expressed K14431: transcription factor TGA
9 Sobic.010G218300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA binding protein, putative, expressed -
10 Sobic.001G218500 MATH domain containing protein, expressed -
11 Sobic.004G079900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@copper-transporting ATPase, putative, expressed K17686: copA, ctpA, P-type Cu+ transporter
12 Sobic.010G097200 expressed protein -
13 Sobic.003G255600 expressed protein -
14 Sobic.002G167600 2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
15 Sobic.004G193500 expressed protein -
16 Sobic.009G079900 endoglucanase precursor, putative, expressed -
17 Sobic.001G169400 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
18 Sobic.003G079100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@muconate cycloisomerase, putative, expressed -
19 Sobic.003G183300 peroxidase precursor, putative, expressed K00430: peroxidase
20 Sobic.006G180300 ethylene-responsive protein related, putative, expressed -


Gene co-expression network
sample Sobic001G460400 Sobic001G460400 Sobic001G360700 Sobic001G360700 Sobic001G460400--Sobic001G360700 Sobic001G067800 Sobic001G067800 Sobic001G460400--Sobic001G067800 Sobic004G161900 Sobic004G161900 Sobic001G460400--Sobic004G161900 Sobic003G017601 Sobic003G017601 Sobic001G460400--Sobic003G017601 Sobic002G207200 Sobic002G207200 Sobic001G460400--Sobic002G207200 Sobic001G227850 Sobic001G227850 Sobic001G460400--Sobic001G227850 Sobic009G246700 Sobic009G246700 Sobic001G460400--Sobic009G246700 Sobic008G037900 Sobic008G037900 Sobic001G460400--Sobic008G037900 Sobic010G218300 Sobic010G218300 Sobic001G460400--Sobic010G218300 Sobic004G047600 Sobic004G047600 Sobic001G360700--Sobic004G047600 Sobic007G047300 Sobic007G047300 Sobic001G360700--Sobic007G047300 Sobic002G167600 Sobic002G167600 Sobic001G360700--Sobic002G167600 Sobic002G203900 Sobic002G203900 Sobic001G360700--Sobic002G203900 Sobic001G471800 Sobic001G471800 Sobic001G360700--Sobic001G471800 Sobic002G254900 Sobic002G254900 Sobic001G360700--Sobic002G254900 Sobic002G146000 Sobic002G146000 Sobic001G360700--Sobic002G146000 Sobic004G193500 Sobic004G193500 Sobic001G360700--Sobic004G193500 Sobic001G072600 Sobic001G072600 Sobic001G360700--Sobic001G072600 Sobic005G219600 Sobic005G219600 Sobic001G067800--Sobic005G219600 Sobic001G218500 Sobic001G218500 Sobic001G067800--Sobic001G218500 Sobic003G255600 Sobic003G255600 Sobic001G067800--Sobic003G255600 Sobic001G239200 Sobic001G239200 Sobic001G067800--Sobic001G239200 Sobic001G067800--Sobic004G193500 Sobic009G079900 Sobic009G079900 Sobic001G067800--Sobic009G079900 Sobic003G079100 Sobic003G079100 Sobic001G067800--Sobic003G079100 Sobic002G029600 Sobic002G029600 Sobic001G067800--Sobic002G029600 Sobic003G020500 Sobic003G020500 Sobic001G067800--Sobic003G020500 Sobic003G368000 Sobic003G368000 Sobic004G161900--Sobic003G368000 Sobic004G161900--Sobic003G017601 Sobic010G045400 Sobic010G045400 Sobic004G161900--Sobic010G045400 Sobic004G161900--Sobic008G037900 Sobic004G161900--Sobic001G460400 Sobic004G161900--Sobic001G218500 Sobic004G161900--Sobic003G079100 Sobic002G383900 Sobic002G383900 Sobic004G161900--Sobic002G383900 Sobic004G161900--Sobic003G020500 Sobic003G017601--Sobic001G218500 Sobic001G342000 Sobic001G342000 Sobic003G017601--Sobic001G342000 Sobic002G183750 Sobic002G183750 Sobic003G017601--Sobic002G183750 Sobic002G111900 Sobic002G111900 Sobic003G017601--Sobic002G111900 Sobic003G017601--Sobic003G079100 Sobic010G213600 Sobic010G213600 Sobic003G017601--Sobic010G213600 Sobic003G017601--Sobic003G020500 Sobic005G223700 Sobic005G223700 Sobic003G017601--Sobic005G223700 Sobic005G175900 Sobic005G175900 Sobic003G017601--Sobic005G175900 Sobic002G207200--Sobic007G047300 Sobic002G207200--Sobic004G047600 Sobic002G207200--Sobic001G360700 Sobic003G352700 Sobic003G352700 Sobic002G207200--Sobic003G352700 Sobic002G218900 Sobic002G218900 Sobic002G207200--Sobic002G218900 Sobic002G207200--Sobic002G167600 Sobic002G207200--Sobic001G460400 Sobic004G111100 Sobic004G111100 Sobic002G207200--Sobic004G111100 Sobic009G034300 Sobic009G034300 Sobic002G207200--Sobic009G034300 Sobic008G191400 Sobic008G191400 Sobic001G227850--Sobic008G191400 Sobic003G319400 Sobic003G319400 Sobic001G227850--Sobic003G319400 Sobic001G299100 Sobic001G299100 Sobic001G227850--Sobic001G299100 Sobic010G031700 Sobic010G031700 Sobic001G227850--Sobic010G031700 Sobic005G202300 Sobic005G202300 Sobic001G227850--Sobic005G202300 Sobic006G003100 Sobic006G003100 Sobic001G227850--Sobic006G003100 Sobic006G135300 Sobic006G135300 Sobic001G227850--Sobic006G135300 Sobic010G152400 Sobic010G152400 Sobic001G227850--Sobic010G152400 Sobic010G097200 Sobic010G097200 Sobic001G227850--Sobic010G097200 Sobic001G133900 Sobic001G133900 Sobic009G246700--Sobic001G133900 Sobic009G026101 Sobic009G026101 Sobic009G246700--Sobic009G026101 Sobic001G406700 Sobic001G406700 Sobic009G246700--Sobic001G406700 Sobic007G119500 Sobic007G119500 Sobic009G246700--Sobic007G119500 Sobic009G246700--Sobic001G072600 Sobic009G246700--Sobic002G167600 Sobic009G246700--Sobic001G360700 Sobic009G246700--Sobic001G460400 Sobic006G144600 Sobic006G144600 Sobic009G246700--Sobic006G144600 Sobic008G037900--Sobic010G097200 Sobic007G220400 Sobic007G220400 Sobic008G037900--Sobic007G220400 Sobic006G205700 Sobic006G205700 Sobic008G037900--Sobic006G205700 Sobic008G037900--Sobic002G111900 Sobic010G241900 Sobic010G241900 Sobic008G037900--Sobic010G241900 Sobic009G065700 Sobic009G065700 Sobic008G037900--Sobic009G065700 Sobic003G441800 Sobic003G441800 Sobic008G037900--Sobic003G441800 Sobic003G167300 Sobic003G167300 Sobic008G037900--Sobic003G167300 Sobic002G391400 Sobic002G391400 Sobic008G037900--Sobic002G391400 Sobic010G218300--Sobic001G460400 Sobic002G283900 Sobic002G283900 Sobic010G218300--Sobic002G283900 Sobic010G218300--Sobic004G161900 Sobic010G218300--Sobic010G045400 Sobic006G160900 Sobic006G160900 Sobic010G218300--Sobic006G160900 Sobic009G238900 Sobic009G238900 Sobic010G218300--Sobic009G238900 Sobic010G218300--Sobic008G191400 Sobic009G221500 Sobic009G221500 Sobic010G218300--Sobic009G221500 Sobic001G245800 Sobic001G245800 Sobic010G218300--Sobic001G245800
Octagon: transcription factors


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