Gene annotation
Transcriptome id Sobic.001G169400.2
Synonym SbERF3, ethylene response factor 3, Sb01g014810, RAP2.11
Functional annotation Not investigated (PubMedID : 23766026)
AP2 domain containing protein, expressed
UniProt A0A1Z5S643
Pfam PF00847
Panther DB PTHR31194 PTHR31194:SF0
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT5G19790 : related to AP2 11
RAP-DB (Rice) LOC_Os12g39330.1 : AP2 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a053203 , Zm00025a046712 , Zm00025a007423 , Zm00025a035951 , Zm00025a055020 , Zm00025a022855 , Zm00025a033320 , Zm00025a057002 , Zm00025a001066 , Zm00025a045437 , Zm00025a048480 , Zm00025a021006 , Zm00025a022123 , Zm00025a031821 , Zm00025a033171 , Zm00025a009843 , Zm00025a000671
Brachypodium KQJ90021 , KQJ98629 , PNT61818 , KQK00491 , PNT62439 , KQJ98221 , KQK12503 , KQJ86112 , KQJ94686
Barley HORVU6Hr1G060220.6 , HORVU6Hr1G060220.7 , HORVU6Hr1G060220.4 , HORVU6Hr1G060220.5 , HORVU6Hr1G060220.3 , HORVU6Hr1G060220.2 , HORVU6Hr1G060220.1 , HORVU5Hr1G018720.1 , HORVU7Hr1G037180.2 , HORVU3Hr1G030310.1 , HORVU7Hr1G037180.1 , HORVU6Hr1G074970.3 , HORVU6Hr1G074970.2 , HORVU6Hr1G074970.1 , HORVU4Hr1G013410.1 , HORVU5Hr1G058270.1 , HORVU5Hr1G058270.2 , HORVU5Hr1G058270.5 , HORVU5Hr1G058270.4 , HORVU5Hr1G058270.6 , HORVU4Hr1G000960.1 , HORVU6Hr1G060140.3 , HORVU6Hr1G060140.1
Wheat TraesCS5D02G200900 , TraesCS5B02G193200
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G152500 glycosyltransferase, putative, expressed -
2 Sobic.003G183300 peroxidase precursor, putative, expressed K00430: peroxidase
3 Sobic.003G382200 methyltransferase domain containing protein, expressed -
4 Sobic.001G274400 serine/threonine-protein kinase BRI1-like 2 precursor, putative, expressed -
5 Sobic.001G218400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MATH domain containing protein, expressed -
6 Sobic.006G097900 xyloglucan fucosyltransferase, putative, expressed K13681: xyloglucan fucosyltransferase
7 Sobic.002G391900 peroxidase precursor, putative, expressed -
8 Sobic.010G191600 cytochrome P450, putative, expressed -
9 Sobic.007G111800 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
10 Sobic.003G255600 expressed protein -
11 Sobic.002G183750 - -
12 Sobic.006G130400 TGF-beta receptor, type I/II extracellular region, putative, expressed -
13 Sobic.010G028100 GDP-mannose 4,6 dehydratase 2, putative, expressed K01711: gmd, GDPmannose 4,6-dehydratase
14 Sobic.004G121600 expansin precursor, putative, expressed -
15 Sobic.007G015100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@cytochrome P450, putative, expressed -
16 Sobic.002G146000 "Localized in cytoplasm, involved in the process of drought defense"(PubMedID : 27231650)@dehydrogenase, putative, expressed K09753: cinnamoyl-CoA reductase
17 Sobic.006G031100 CAP (Cysteine-rich secretory proteins("PubMedID : 26759170,PubMedID : 24597475")@SCP-like extracellular protein, expressed -
18 Sobic.002G111900 receptor-like kinase, putative, expressed -
19 Sobic.002G082000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@kelch repeat protein, putative, expressed -
20 Sobic.006G085700 OsPDIL1-2 protein disulfide isomerase PDIL1-2, expressed K09580: PDIA1, protein disulfide-isomerase A1


Gene co-expression network
sample Sobic001G169400 Sobic001G169400 Sobic010G152500 Sobic010G152500 Sobic001G169400--Sobic010G152500 Sobic003G183300 Sobic003G183300 Sobic001G169400--Sobic003G183300 Sobic003G382200 Sobic003G382200 Sobic001G169400--Sobic003G382200 Sobic001G274400 Sobic001G274400 Sobic001G169400--Sobic001G274400 Sobic001G218400 Sobic001G218400 Sobic001G169400--Sobic001G218400 Sobic006G097900 Sobic006G097900 Sobic001G169400--Sobic006G097900 Sobic002G391900 Sobic002G391900 Sobic001G169400--Sobic002G391900 Sobic010G191600 Sobic010G191600 Sobic001G169400--Sobic010G191600 Sobic007G111800 Sobic007G111800 Sobic001G169400--Sobic007G111800 Sobic010G152500--Sobic003G382200 Sobic004G009200 Sobic004G009200 Sobic010G152500--Sobic004G009200 Sobic010G152500--Sobic002G391900 Sobic007G015100 Sobic007G015100 Sobic010G152500--Sobic007G015100 Sobic009G106100 Sobic009G106100 Sobic010G152500--Sobic009G106100 Sobic005G106300 Sobic005G106300 Sobic010G152500--Sobic005G106300 Sobic002G029500 Sobic002G029500 Sobic010G152500--Sobic002G029500 Sobic010G152500--Sobic006G097900 Sobic005G182900 Sobic005G182900 Sobic010G152500--Sobic005G182900 Sobic004G271800 Sobic004G271800 Sobic003G183300--Sobic004G271800 Sobic002G146000 Sobic002G146000 Sobic003G183300--Sobic002G146000 Sobic003G000100 Sobic003G000100 Sobic003G183300--Sobic003G000100 Sobic010G028100 Sobic010G028100 Sobic003G183300--Sobic010G028100 Sobic006G003100 Sobic006G003100 Sobic003G183300--Sobic006G003100 Sobic006G092700 Sobic006G092700 Sobic003G183300--Sobic006G092700 Sobic006G135300 Sobic006G135300 Sobic003G183300--Sobic006G135300 Sobic008G135300 Sobic008G135300 Sobic003G183300--Sobic008G135300 Sobic010G070400 Sobic010G070400 Sobic003G183300--Sobic010G070400 Sobic003G382200--Sobic010G152500 Sobic003G382200--Sobic002G391900 Sobic003G382200--Sobic004G009200 Sobic003G382200--Sobic009G106100 Sobic005G216600 Sobic005G216600 Sobic003G382200--Sobic005G216600 Sobic003G382200--Sobic001G274400 Sobic003G382200--Sobic005G106300 Sobic003G382200--Sobic005G182900 Sobic005G197400 Sobic005G197400 Sobic003G382200--Sobic005G197400 Sobic004G014600 Sobic004G014600 Sobic001G274400--Sobic004G014600 Sobic009G165100 Sobic009G165100 Sobic001G274400--Sobic009G165100 Sobic001G274400--Sobic010G152500 Sobic004G322000 Sobic004G322000 Sobic001G274400--Sobic004G322000 Sobic001G274400--Sobic003G382200 Sobic007G090600 Sobic007G090600 Sobic001G274400--Sobic007G090600 Sobic002G029600 Sobic002G029600 Sobic001G274400--Sobic002G029600 Sobic006G031100 Sobic006G031100 Sobic001G274400--Sobic006G031100 Sobic001G274400--Sobic006G135300 Sobic001G218400--Sobic006G097900 Sobic004G121600 Sobic004G121600 Sobic001G218400--Sobic004G121600 Sobic001G181600 Sobic001G181600 Sobic001G218400--Sobic001G181600 Sobic003G441800 Sobic003G441800 Sobic001G218400--Sobic003G441800 Sobic001G218400--Sobic010G191600 Sobic003G154500 Sobic003G154500 Sobic001G218400--Sobic003G154500 Sobic003G441700 Sobic003G441700 Sobic001G218400--Sobic003G441700 Sobic010G010000 Sobic010G010000 Sobic001G218400--Sobic010G010000 Sobic005G119900 Sobic005G119900 Sobic001G218400--Sobic005G119900 Sobic006G097900--Sobic004G121600 Sobic010G268700 Sobic010G268700 Sobic006G097900--Sobic010G268700 Sobic006G097900--Sobic003G441700 Sobic006G097900--Sobic001G181600 Sobic006G097900--Sobic001G218400 Sobic006G097900--Sobic005G216600 Sobic001G293100 Sobic001G293100 Sobic006G097900--Sobic001G293100 Sobic006G097900--Sobic003G441800 Sobic006G097900--Sobic005G119900 Sobic002G391900--Sobic003G382200 Sobic002G391900--Sobic010G152500 Sobic002G391900--Sobic004G009200 Sobic002G391900--Sobic009G106100 Sobic005G069500 Sobic005G069500 Sobic002G391900--Sobic005G069500 Sobic002G391900--Sobic006G097900 Sobic002G391900--Sobic005G216600 Sobic002G391900--Sobic006G031100 Sobic006G224500 Sobic006G224500 Sobic002G391900--Sobic006G224500 Sobic005G217766 Sobic005G217766 Sobic010G191600--Sobic005G217766 Sobic005G097400 Sobic005G097400 Sobic010G191600--Sobic005G097400 Sobic002G111900 Sobic002G111900 Sobic010G191600--Sobic002G111900 Sobic002G391400 Sobic002G391400 Sobic010G191600--Sobic002G391400 Sobic006G205700 Sobic006G205700 Sobic010G191600--Sobic006G205700 Sobic010G191600--Sobic001G218400 Sobic010G191700 Sobic010G191700 Sobic010G191600--Sobic010G191700 Sobic010G191600--Sobic003G441800 Sobic007G206800 Sobic007G206800 Sobic010G191600--Sobic007G206800 Sobic007G111800--Sobic006G097900 Sobic007G015000 Sobic007G015000 Sobic007G111800--Sobic007G015000 Sobic007G111800--Sobic010G268700 Sobic001G271300 Sobic001G271300 Sobic007G111800--Sobic001G271300 Sobic007G212000 Sobic007G212000 Sobic007G111800--Sobic007G212000 Sobic007G111800--Sobic001G293100 Sobic007G111800--Sobic005G106300 Sobic007G111800--Sobic010G152500 Sobic003G083800 Sobic003G083800 Sobic007G111800--Sobic003G083800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.