Gene annotation
Transcriptome id Sobic.002G082000.1
Synonym Sb02g006860
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
kelch repeat protein, putative, expressed
UniProt A0A1B6Q9X2
Pfam PF13415 PF13418
Panther DB PTHR23244 PTHR23244:SF276
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G07720 : Galactose oxidase/kelch repeat superfamily protein
RAP-DB (Rice) LOC_Os09g07460.1 : kelch repeat protein, putative, expressed
MaizeGDB (Corn) Zm00025a045442
Brachypodium KQK07894
Barley HORVU5Hr1G051310.3 , HORVU5Hr1G051310.2 , HORVU5Hr1G051310.1
Wheat TraesCS5D02G172400 , TraesCS5A02G168200 , TraesCS5B02G165000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G029500 cytochrome P450 84A1, putative, expressed K09755: CYP84A, ferulate-5-hydroxylase
2 Sobic.002G391300 peroxidase precursor, putative, expressed K00430: peroxidase
3 Sobic.002G111900 receptor-like kinase, putative, expressed -
4 Sobic.005G134200 "domain confirmed by Pfam database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsGH3.13 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
5 Sobic.006G047200 helix-loop-helix DNA-binding domain containing protein, expressed -
6 Sobic.006G059800 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
7 Sobic.002G289500 carbohydrate binding protein, putative, expressed -
8 Sobic.006G171100 expansin precursor, putative, expressed -
9 Sobic.005G035900 PAN domain-containing protein At5g03700 precursor, putative, expressed -
10 Sobic.006G230100 TKL_IRAK_DUF26-ld.1 - DUF26 kinases have homology to DUF26 containing loci, expressed -
11 Sobic.007G015100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@cytochrome P450, putative, expressed -
12 Sobic.009G106500 PMR5, putative, expressed -
13 Sobic.005G101000 - -
14 Sobic.004G261500 phosphoribosyl transferase, putative, expressed -
15 Sobic.005G226400 RGH1A, putative, expressed -
16 Sobic.010G191700 cytochrome P450, putative, expressed -
17 Sobic.005G120900 expressed protein -
18 Sobic.007G064900 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
19 Sobic.001G395900 Nicotianamine synthase 4("PubMedID : 26759170,PubMedID : 24597475")@nicotianamine synthase, putative, expressed K05953: nicotianamine synthase
20 Sobic.003G079100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@muconate cycloisomerase, putative, expressed -


Gene co-expression network
sample Sobic002G082000 Sobic002G082000 Sobic002G029500 Sobic002G029500 Sobic002G082000--Sobic002G029500 Sobic002G391300 Sobic002G391300 Sobic002G082000--Sobic002G391300 Sobic002G111900 Sobic002G111900 Sobic002G082000--Sobic002G111900 Sobic005G134200 Sobic005G134200 Sobic002G082000--Sobic005G134200 Sobic006G047200 Sobic006G047200 Sobic002G082000--Sobic006G047200 Sobic006G059800 Sobic006G059800 Sobic002G082000--Sobic006G059800 Sobic002G289500 Sobic002G289500 Sobic002G082000--Sobic002G289500 Sobic006G171100 Sobic006G171100 Sobic002G082000--Sobic006G171100 Sobic005G035900 Sobic005G035900 Sobic002G082000--Sobic005G035900 Sobic005G182900 Sobic005G182900 Sobic002G029500--Sobic005G182900 Sobic007G064900 Sobic007G064900 Sobic002G029500--Sobic007G064900 Sobic005G097900 Sobic005G097900 Sobic002G029500--Sobic005G097900 Sobic005G106300 Sobic005G106300 Sobic002G029500--Sobic005G106300 Sobic008G033100 Sobic008G033100 Sobic002G029500--Sobic008G033100 Sobic002G029500--Sobic002G289500 Sobic001G415100 Sobic001G415100 Sobic002G029500--Sobic001G415100 Sobic007G015000 Sobic007G015000 Sobic002G029500--Sobic007G015000 Sobic002G029500--Sobic002G082000 Sobic003G441601 Sobic003G441601 Sobic002G391300--Sobic003G441601 Sobic002G391300--Sobic002G111900 Sobic010G191700 Sobic010G191700 Sobic002G391300--Sobic010G191700 Sobic010G241900 Sobic010G241900 Sobic002G391300--Sobic010G241900 Sobic002G391300--Sobic006G171100 Sobic010G128300 Sobic010G128300 Sobic002G391300--Sobic010G128300 Sobic002G391300--Sobic005G134200 Sobic002G391300--Sobic002G289500 Sobic009G136800 Sobic009G136800 Sobic002G391300--Sobic009G136800 Sobic002G111900--Sobic010G191700 Sobic002G111900--Sobic002G391300 Sobic002G111900--Sobic003G441601 Sobic007G220400 Sobic007G220400 Sobic002G111900--Sobic007G220400 Sobic002G111900--Sobic010G241900 Sobic010G010000 Sobic010G010000 Sobic002G111900--Sobic010G010000 Sobic002G111900--Sobic006G171100 Sobic005G046400 Sobic005G046400 Sobic002G111900--Sobic005G046400 Sobic002G111900--Sobic006G059800 Sobic010G269000 Sobic010G269000 Sobic005G134200--Sobic010G269000 Sobic004G008600 Sobic004G008600 Sobic005G134200--Sobic004G008600 Sobic005G226400 Sobic005G226400 Sobic005G134200--Sobic005G226400 Sobic005G134200--Sobic002G391300 Sobic005G134200--Sobic010G191700 Sobic005G134200--Sobic010G241900 Sobic005G134200--Sobic010G128300 Sobic005G134200--Sobic007G220400 Sobic005G134200--Sobic006G047200 Sobic006G047200--Sobic005G035900 Sobic005G205400 Sobic005G205400 Sobic006G047200--Sobic005G205400 Sobic008G084800 Sobic008G084800 Sobic006G047200--Sobic008G084800 Sobic002G392000 Sobic002G392000 Sobic006G047200--Sobic002G392000 Sobic001G234100 Sobic001G234100 Sobic006G047200--Sobic001G234100 Sobic005G101000 Sobic005G101000 Sobic006G047200--Sobic005G101000 Sobic006G047200--Sobic009G136800 Sobic006G047200--Sobic010G241900 Sobic006G047200--Sobic005G134200 Sobic006G059800--Sobic002G111900 Sobic006G059800--Sobic006G047200 Sobic006G059800--Sobic005G035900 Sobic006G059800--Sobic002G391300 Sobic006G059800--Sobic002G392000 Sobic006G059800--Sobic010G010000 Sobic006G059800--Sobic010G191700 Sobic006G059800--Sobic006G171100 Sobic006G059800--Sobic010G241900 Sobic002G289500--Sobic002G391300 Sobic002G289500--Sobic001G415100 Sobic002G289500--Sobic003G441601 Sobic002G289500--Sobic006G171100 Sobic001G153100 Sobic001G153100 Sobic002G289500--Sobic001G153100 Sobic002G289500--Sobic009G136800 Sobic002G289500--Sobic002G029500 Sobic006G230100 Sobic006G230100 Sobic002G289500--Sobic006G230100 Sobic002G063700 Sobic002G063700 Sobic002G289500--Sobic002G063700 Sobic006G171100--Sobic009G136800 Sobic006G171100--Sobic002G391300 Sobic006G171100--Sobic010G010000 Sobic006G171100--Sobic003G441601 Sobic006G171100--Sobic002G111900 Sobic006G171100--Sobic005G046400 Sobic006G171100--Sobic002G289500 Sobic006G171100--Sobic005G226400 Sobic006G171100--Sobic006G047200 Sobic005G035900--Sobic006G047200 Sobic005G035900--Sobic010G241900 Sobic005G035900--Sobic002G111900 Sobic005G035900--Sobic007G220400 Sobic005G035900--Sobic006G059800 Sobic005G035900--Sobic002G392000 Sobic005G035900--Sobic005G134200 Sobic005G035900--Sobic006G171100 Sobic005G035900--Sobic002G391300
Octagon: transcription factors


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