Gene annotation
Transcriptome id Sobic.005G134200.1
Synonym GH3.17, SbGH3-13, Gretchen Hagen3, Sb05g019810
Functional annotation "domain confirmed by Pfam database, expression induced by IAA and BR treatments" (PubMedID : 20499123)
OsGH3.13 - Probable indole-3-acetic acid-amido synthetase, expressed
UniProt A0A1B6PS82
Pfam PF03321
Panther DB PTHR31901
NCBI CDD -
KEGG Orthology K14487; auxin responsive GH3 gene family
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G28130 : Auxin-responsive GH3 family protein
RAP-DB (Rice) LOC_Os11g32520.1 : OsGH3.13 - Probable indole-3-acetic acid-amido synthetase, expressed
MaizeGDB (Corn) Zm00025a015690 , Zm00025a027255 , Zm00025a037889 , Zm00025a002969 , Zm00025a049121 , Zm00025a027437
Brachypodium KQJ88359
Barley -
Wheat TraesCS3A02G301200 , TraesCS3B02G335300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G269000 bZIP transcription factor domain containing protein, expressed -
2 Sobic.004G008600 receptor protein kinase CLAVATA1 precursor, putative, expressed -
3 Sobic.005G226400 RGH1A, putative, expressed -
4 Sobic.002G391300 peroxidase precursor, putative, expressed K00430: peroxidase
5 Sobic.010G191700 cytochrome P450, putative, expressed -
6 Sobic.010G241900 Leucine-rich receptor-like protein kinase family protein(PubMedID : 28640841)@serine/threonine-protein kinase BRI1-like 2 precursor, putative, expressed -
7 Sobic.010G128300 peroxidase precursor, putative, expressed K00430: peroxidase
8 Sobic.007G220400 receptor-like protein kinase 2 precursor, putative, expressed -
9 Sobic.006G047200 helix-loop-helix DNA-binding domain containing protein, expressed -
10 Sobic.005G226350 - -
11 Sobic.002G111900 receptor-like kinase, putative, expressed -
12 Sobic.006G171100 expansin precursor, putative, expressed -
13 Sobic.009G136800 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
14 Sobic.002G289500 carbohydrate binding protein, putative, expressed -
15 Sobic.005G035900 PAN domain-containing protein At5g03700 precursor, putative, expressed -
16 Sobic.002G082000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@kelch repeat protein, putative, expressed -
17 Sobic.003G441601 - -
18 Sobic.005G216500 plant protein of unknown function domain containing protein, expressed -
19 Sobic.003G046700 expressed protein -
20 Sobic.005G205400 - -


Gene co-expression network
sample Sobic005G134200 Sobic005G134200 Sobic010G269000 Sobic010G269000 Sobic005G134200--Sobic010G269000 Sobic004G008600 Sobic004G008600 Sobic005G134200--Sobic004G008600 Sobic005G226400 Sobic005G226400 Sobic005G134200--Sobic005G226400 Sobic002G391300 Sobic002G391300 Sobic005G134200--Sobic002G391300 Sobic010G191700 Sobic010G191700 Sobic005G134200--Sobic010G191700 Sobic010G241900 Sobic010G241900 Sobic005G134200--Sobic010G241900 Sobic010G128300 Sobic010G128300 Sobic005G134200--Sobic010G128300 Sobic007G220400 Sobic007G220400 Sobic005G134200--Sobic007G220400 Sobic006G047200 Sobic006G047200 Sobic005G134200--Sobic006G047200 Sobic010G269000--Sobic004G008600 Sobic010G269000--Sobic005G134200 Sobic003G046700 Sobic003G046700 Sobic010G269000--Sobic003G046700 Sobic005G120900 Sobic005G120900 Sobic010G269000--Sobic005G120900 Sobic005G216500 Sobic005G216500 Sobic010G269000--Sobic005G216500 Sobic005G226350 Sobic005G226350 Sobic010G269000--Sobic005G226350 Sobic010G269000--Sobic007G220400 Sobic010G269000--Sobic005G226400 Sobic010G269000--Sobic010G241900 Sobic004G008600--Sobic010G269000 Sobic004G008600--Sobic005G134200 Sobic004G008600--Sobic005G216500 Sobic004G008600--Sobic003G046700 Sobic004G008600--Sobic005G226350 Sobic004G008600--Sobic005G120900 Sobic004G008600--Sobic007G220400 Sobic004G008600--Sobic005G226400 Sobic004G008600--Sobic010G191700 Sobic005G226400--Sobic005G134200 Sobic009G136800 Sobic009G136800 Sobic005G226400--Sobic009G136800 Sobic005G226400--Sobic010G128300 Sobic005G226400--Sobic002G391300 Sobic006G171100 Sobic006G171100 Sobic005G226400--Sobic006G171100 Sobic005G223700 Sobic005G223700 Sobic005G226400--Sobic005G223700 Sobic005G226400--Sobic006G047200 Sobic005G226400--Sobic005G226350 Sobic010G010000 Sobic010G010000 Sobic005G226400--Sobic010G010000 Sobic003G441601 Sobic003G441601 Sobic002G391300--Sobic003G441601 Sobic002G111900 Sobic002G111900 Sobic002G391300--Sobic002G111900 Sobic002G391300--Sobic010G191700 Sobic002G391300--Sobic010G241900 Sobic002G391300--Sobic006G171100 Sobic002G391300--Sobic010G128300 Sobic002G391300--Sobic005G134200 Sobic002G289500 Sobic002G289500 Sobic002G391300--Sobic002G289500 Sobic002G391300--Sobic009G136800 Sobic010G191700--Sobic010G241900 Sobic010G191700--Sobic002G111900 Sobic010G191700--Sobic007G220400 Sobic010G191700--Sobic002G391300 Sobic010G191700--Sobic010G128300 Sobic002G391400 Sobic002G391400 Sobic010G191700--Sobic002G391400 Sobic010G191700--Sobic003G441601 Sobic007G206800 Sobic007G206800 Sobic010G191700--Sobic007G206800 Sobic010G191700--Sobic005G134200 Sobic010G241900--Sobic010G191700 Sobic010G241900--Sobic002G391400 Sobic010G241900--Sobic007G220400 Sobic010G241900--Sobic002G391300 Sobic010G241900--Sobic010G128300 Sobic010G241900--Sobic007G206800 Sobic010G241900--Sobic002G111900 Sobic010G241900--Sobic005G134200 Sobic010G241900--Sobic005G226350 Sobic002G392000 Sobic002G392000 Sobic010G128300--Sobic002G392000 Sobic010G128300--Sobic010G241900 Sobic010G128300--Sobic010G191700 Sobic010G128300--Sobic002G391300 Sobic010G128300--Sobic005G226400 Sobic010G128300--Sobic005G226350 Sobic010G128300--Sobic005G134200 Sobic010G128300--Sobic009G136800 Sobic010G128300--Sobic007G220400 Sobic007G220400--Sobic010G241900 Sobic007G220400--Sobic010G191700 Sobic007G220400--Sobic007G206800 Sobic007G220400--Sobic002G111900 Sobic007G220400--Sobic005G226350 Sobic007G220400--Sobic002G391400 Sobic007G220400--Sobic005G134200 Sobic007G220400--Sobic010G128300 Sobic002G334000 Sobic002G334000 Sobic007G220400--Sobic002G334000 Sobic005G035900 Sobic005G035900 Sobic006G047200--Sobic005G035900 Sobic005G205400 Sobic005G205400 Sobic006G047200--Sobic005G205400 Sobic008G084800 Sobic008G084800 Sobic006G047200--Sobic008G084800 Sobic006G047200--Sobic002G392000 Sobic001G234100 Sobic001G234100 Sobic006G047200--Sobic001G234100 Sobic005G101000 Sobic005G101000 Sobic006G047200--Sobic005G101000 Sobic006G047200--Sobic009G136800 Sobic006G047200--Sobic010G241900 Sobic006G047200--Sobic005G134200
Octagon: transcription factors


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