Gene annotation
Transcriptome id Sobic.004G121600.1
Synonym Sb04g010140, ATEXPA11, ATHEXPALPHA1.14, ATEXP11, EXP11, EXPA11
Functional annotation expansin precursor, putative, expressed
UniProt C5XZN9
Pfam PF03330 PF01357
Panther DB PTHR31867 PTHR31867:SF19
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G20190 : expansin 11
RAP-DB (Rice) LOC_Os02g16850.1 : expansin precursor, putative, expressed
MaizeGDB (Corn) Zm00025a023911 , Zm00025a027043 , Zm00025a043994 , Zm00025a019878 , Zm00025a019879 , Zm00025a008818 , Zm00025a024073 , Zm00025a019850 , Zm00025a019851 , Zm00025a019852 , Zm00025a019849 , Zm00025a016421 , Zm00025a053441
Brachypodium KQJ96857 , KQJ96854 , KQJ94334 , KQK05753 , KQJ94340 , KQK12421
Barley HORVU3Hr1G076670.2 , HORVU3Hr1G034030.4 , HORVU3Hr1G076640.2 , HORVU3Hr1G076640.3 , HORVU3Hr1G076640.1 , HORVU3Hr1G076640.4 , HORVU2Hr1G093690.1 , HORVU2Hr1G093690.2 , HORVU3Hr1G076670.1 , HORVU7Hr1G092600.1 , HORVU7Hr1G092600.2 , HORVU7Hr1G092600.3 , HORVU3Hr1G034030.3 , HORVU3Hr1G034030.2 , HORVU3Hr1G034030.1
Wheat TraesCS3B02G348000 , TraesCS3D02G313200 , TraesCS3A02G160100 , TraesCS3D02G313400 , TraesCS1D02G299700 , TraesCS7D02G484600 , TraesCS1A02G300200 , TraesCS1A02G300200 , TraesCS4D02G219700 , TraesCS2B02G411700 , TraesCS3A02G317900 , TraesCS1B02G310300 , TraesCS3D02G175800 , TraesCS7B02G293800 , TraesCS6B02G336500 , TraesCS7D02G387400 , TraesCS7D02G387400 , TraesCS3A02G165900 , TraesCS3D02G176000 , TraesCS3B02G200100 , TraesCS3D02G313300 , TraesCS3A02G165600 , TraesCS3B02G199900 , TraesCS2D02G391600
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G441700 RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed -
2 Sobic.001G301000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expansin precursor, putative, expressed -
3 Sobic.006G097900 xyloglucan fucosyltransferase, putative, expressed K13681: xyloglucan fucosyltransferase
4 Sobic.005G119900 reticuline oxidase-like protein precursor, putative, expressed -
5 Sobic.003G053200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
6 Sobic.003G441800 RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed -
7 Sobic.008G010500 peroxidase precursor, putative, expressed K00430: peroxidase
8 Sobic.001G218400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MATH domain containing protein, expressed -
9 Sobic.004G121800 expansin precursor, putative, expressed -
10 Sobic.001G231800 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
11 Sobic.001G181600 dehydrogenase/reductase, putative, expressed -
12 Sobic.004G029400 periplasmic beta-glucosidase precursor, putative, expressed K05349: beta-glucosidase
13 Sobic.009G055300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase
14 Sobic.010G268700 expansin precursor, putative, expressed -
15 Sobic.001G272800 NBS-LRR disease resistance protein, putative, expressed -
16 Sobic.005G216600 plant protein of unknown function domain containing protein, expressed -
17 Sobic.007G186500 resistance protein, putative, expressed -
18 Sobic.009G065700 - -
19 Sobic.007G037600 C4-dicarboxylate transporter/malic acid transport protein, expressed -
20 Sobic.003G154500 helix-loop-helix DNA-binding domain containing protein, expressed -


Gene co-expression network
sample Sobic004G121600 Sobic004G121600 Sobic003G441700 Sobic003G441700 Sobic004G121600--Sobic003G441700 Sobic001G301000 Sobic001G301000 Sobic004G121600--Sobic001G301000 Sobic006G097900 Sobic006G097900 Sobic004G121600--Sobic006G097900 Sobic005G119900 Sobic005G119900 Sobic004G121600--Sobic005G119900 Sobic003G053200 Sobic003G053200 Sobic004G121600--Sobic003G053200 Sobic003G441800 Sobic003G441800 Sobic004G121600--Sobic003G441800 Sobic008G010500 Sobic008G010500 Sobic004G121600--Sobic008G010500 Sobic001G218400 Sobic001G218400 Sobic004G121600--Sobic001G218400 Sobic004G121800 Sobic004G121800 Sobic004G121600--Sobic004G121800 Sobic003G441700--Sobic005G119900 Sobic003G441700--Sobic003G053200 Sobic003G441700--Sobic003G441800 Sobic003G441700--Sobic004G121600 Sobic003G441700--Sobic001G301000 Sobic009G055300 Sobic009G055300 Sobic003G441700--Sobic009G055300 Sobic001G181600 Sobic001G181600 Sobic003G441700--Sobic001G181600 Sobic003G441700--Sobic006G097900 Sobic001G231800 Sobic001G231800 Sobic003G441700--Sobic001G231800 Sobic001G301000--Sobic001G231800 Sobic001G301000--Sobic008G010500 Sobic001G301000--Sobic004G121600 Sobic001G301000--Sobic003G441700 Sobic001G301000--Sobic005G119900 Sobic001G301000--Sobic003G053200 Sobic010G268700 Sobic010G268700 Sobic001G301000--Sobic010G268700 Sobic010G245400 Sobic010G245400 Sobic001G301000--Sobic010G245400 Sobic001G301000--Sobic006G097900 Sobic006G097900--Sobic004G121600 Sobic006G097900--Sobic010G268700 Sobic006G097900--Sobic003G441700 Sobic006G097900--Sobic001G181600 Sobic006G097900--Sobic001G218400 Sobic005G216600 Sobic005G216600 Sobic006G097900--Sobic005G216600 Sobic001G293100 Sobic001G293100 Sobic006G097900--Sobic001G293100 Sobic006G097900--Sobic003G441800 Sobic006G097900--Sobic005G119900 Sobic005G119900--Sobic003G441700 Sobic005G119900--Sobic001G301000 Sobic005G119900--Sobic001G181600 Sobic005G119900--Sobic004G121600 Sobic005G119900--Sobic003G441800 Sobic005G119900--Sobic003G053200 Sobic003G154500 Sobic003G154500 Sobic005G119900--Sobic003G154500 Sobic005G119900--Sobic009G055300 Sobic005G119900--Sobic001G231800 Sobic003G053200--Sobic003G441800 Sobic003G053200--Sobic003G441700 Sobic003G053200--Sobic001G301000 Sobic003G053200--Sobic004G121600 Sobic010G031700 Sobic010G031700 Sobic003G053200--Sobic010G031700 Sobic003G053200--Sobic005G119900 Sobic004G029400 Sobic004G029400 Sobic003G053200--Sobic004G029400 Sobic003G053200--Sobic001G231800 Sobic007G037600 Sobic007G037600 Sobic003G053200--Sobic007G037600 Sobic003G441800--Sobic003G053200 Sobic003G441800--Sobic003G441700 Sobic003G441601 Sobic003G441601 Sobic003G441800--Sobic003G441601 Sobic005G046400 Sobic005G046400 Sobic003G441800--Sobic005G046400 Sobic006G205700 Sobic006G205700 Sobic003G441800--Sobic006G205700 Sobic003G441800--Sobic004G121600 Sobic003G441800--Sobic005G119900 Sobic003G441800--Sobic007G037600 Sobic009G065700 Sobic009G065700 Sobic003G441800--Sobic009G065700 Sobic008G010500--Sobic001G301000 Sobic008G010500--Sobic001G231800 Sobic008G010500--Sobic004G121600 Sobic008G010500--Sobic010G268700 Sobic008G010500--Sobic005G119900 Sobic005G206000 Sobic005G206000 Sobic008G010500--Sobic005G206000 Sobic008G010500--Sobic003G441700 Sobic008G010500--Sobic010G245400 Sobic008G010500--Sobic003G053200 Sobic001G218400--Sobic006G097900 Sobic001G218400--Sobic004G121600 Sobic001G218400--Sobic001G181600 Sobic001G218400--Sobic003G441800 Sobic010G191600 Sobic010G191600 Sobic001G218400--Sobic010G191600 Sobic001G218400--Sobic003G154500 Sobic001G218400--Sobic003G441700 Sobic010G010000 Sobic010G010000 Sobic001G218400--Sobic010G010000 Sobic001G218400--Sobic005G119900 Sobic004G121800--Sobic004G121600 Sobic004G121800--Sobic003G441700 Sobic004G121800--Sobic003G053200 Sobic001G272800 Sobic001G272800 Sobic004G121800--Sobic001G272800 Sobic004G121800--Sobic008G010500 Sobic004G121800--Sobic003G441800 Sobic004G121800--Sobic001G301000 Sobic004G121800--Sobic001G231800 Sobic004G121800--Sobic009G055300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.