Gene annotation
Transcriptome id Sobic.003G441800.1
Synonym Sb03g047150
Functional annotation RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed
UniProt C5XJC0
Pfam PF06830
Panther DB PTHR31656 PTHR31656:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G19430 : late embryogenesis abundant protein-related / LEA protein-related
RAP-DB (Rice) LOC_Os01g73700.1 : RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed
MaizeGDB (Corn) Zm00025a011534 , Zm00025a052221 , Zm00025a033481 , Zm00025a040983 , Zm00025a002979 , Zm00025a039058 , Zm00025a025854 , Zm00025a025851
Brachypodium KQK11722 , KQK11721 , KQJ92264 , KQJ92269 , KQK09956 , KQJ82493 , KQK08082
Barley HORVU3Hr1G113430.2 , HORVU3Hr1G113530.1 , HORVU3Hr1G113540.2 , HORVU3Hr1G113540.1 , HORVU5Hr1G082500.1 , HORVU3Hr1G113430.1 , HORVU3Hr1G099570.1 , HORVU3Hr1G113530.6 , HORVU3Hr1G113530.4 , HORVU3Hr1G113530.5 , HORVU3Hr1G113530.2 , HORVU3Hr1G113530.3 , HORVU3Hr1G113450.2 , HORVU3Hr1G113440.2 , HORVU3Hr1G113440.1 , HORVU1Hr1G002950.3 , HORVU1Hr1G002950.2 , HORVU1Hr1G002950.1
Wheat TraesCS2D02G291400 , TraesCS2A02G293800 , TraesCS2D02G291700 , TraesCS3B02G586400 , TraesCS5B02G323600 , TraesCS3B02G586300 , TraesCS3A02G518300 , TraesCS3A02G518700 , TraesCS1D02G022800 , TraesCS2B02G310100 , TraesCS1A02G023300 , TraesCS3B02G512300 , TraesCS5D02G330200 , TraesCS3A02G468400 , TraesCS2A02G294100 , TraesCS3D02G526100 , TraesCS3B02G586200 , TraesCS3B02G587200 , TraesCS3D02G525900 , TraesCS2B02G310400 , TraesCS1B02G029000 , TraesCS3D02G526000 , TraesCS3D02G461500 , TraesCS3A02G518800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G053200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
2 Sobic.003G441700 RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed -
3 Sobic.003G441601 - -
4 Sobic.005G046400 - -
5 Sobic.006G205700 glycosyl hydrolases family 16, putative, expressed -
6 Sobic.004G121600 expansin precursor, putative, expressed -
7 Sobic.005G119900 reticuline oxidase-like protein precursor, putative, expressed -
8 Sobic.007G037600 C4-dicarboxylate transporter/malic acid transport protein, expressed -
9 Sobic.009G065700 - -
10 Sobic.004G029400 periplasmic beta-glucosidase precursor, putative, expressed K05349: beta-glucosidase
11 Sobic.010G031700 thaumatin, putative, expressed -
12 Sobic.001G218400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MATH domain containing protein, expressed -
13 Sobic.003G095100 glycosyltransferase protein, putative, expressed -
14 Sobic.006G097900 xyloglucan fucosyltransferase, putative, expressed K13681: xyloglucan fucosyltransferase
15 Sobic.001G181600 dehydrogenase/reductase, putative, expressed -
16 Sobic.003G167300 peroxidase precursor, putative, expressed K00430: peroxidase
17 Sobic.010G191600 cytochrome P450, putative, expressed -
18 Sobic.002G111900 receptor-like kinase, putative, expressed -
19 Sobic.009G055300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase
20 Sobic.004G014600 disease resistance protein RGA2, putative, expressed -


Gene co-expression network
sample Sobic003G441800 Sobic003G441800 Sobic003G053200 Sobic003G053200 Sobic003G441800--Sobic003G053200 Sobic003G441700 Sobic003G441700 Sobic003G441800--Sobic003G441700 Sobic003G441601 Sobic003G441601 Sobic003G441800--Sobic003G441601 Sobic005G046400 Sobic005G046400 Sobic003G441800--Sobic005G046400 Sobic006G205700 Sobic006G205700 Sobic003G441800--Sobic006G205700 Sobic004G121600 Sobic004G121600 Sobic003G441800--Sobic004G121600 Sobic005G119900 Sobic005G119900 Sobic003G441800--Sobic005G119900 Sobic007G037600 Sobic007G037600 Sobic003G441800--Sobic007G037600 Sobic009G065700 Sobic009G065700 Sobic003G441800--Sobic009G065700 Sobic003G053200--Sobic003G441800 Sobic003G053200--Sobic003G441700 Sobic001G301000 Sobic001G301000 Sobic003G053200--Sobic001G301000 Sobic003G053200--Sobic004G121600 Sobic010G031700 Sobic010G031700 Sobic003G053200--Sobic010G031700 Sobic003G053200--Sobic005G119900 Sobic004G029400 Sobic004G029400 Sobic003G053200--Sobic004G029400 Sobic001G231800 Sobic001G231800 Sobic003G053200--Sobic001G231800 Sobic003G053200--Sobic007G037600 Sobic003G441700--Sobic005G119900 Sobic003G441700--Sobic003G053200 Sobic003G441700--Sobic003G441800 Sobic003G441700--Sobic004G121600 Sobic003G441700--Sobic001G301000 Sobic009G055300 Sobic009G055300 Sobic003G441700--Sobic009G055300 Sobic001G181600 Sobic001G181600 Sobic003G441700--Sobic001G181600 Sobic006G097900 Sobic006G097900 Sobic003G441700--Sobic006G097900 Sobic003G441700--Sobic001G231800 Sobic002G391300 Sobic002G391300 Sobic003G441601--Sobic002G391300 Sobic003G441601--Sobic005G046400 Sobic002G111900 Sobic002G111900 Sobic003G441601--Sobic002G111900 Sobic006G171100 Sobic006G171100 Sobic003G441601--Sobic006G171100 Sobic010G010000 Sobic010G010000 Sobic003G441601--Sobic010G010000 Sobic003G441601--Sobic003G441800 Sobic002G289500 Sobic002G289500 Sobic003G441601--Sobic002G289500 Sobic010G191700 Sobic010G191700 Sobic003G441601--Sobic010G191700 Sobic004G014600 Sobic004G014600 Sobic003G441601--Sobic004G014600 Sobic005G046400--Sobic003G441601 Sobic005G046400--Sobic003G441800 Sobic005G046400--Sobic002G391300 Sobic005G046400--Sobic006G171100 Sobic005G046400--Sobic002G111900 Sobic005G046400--Sobic010G191700 Sobic005G046400--Sobic006G205700 Sobic010G241900 Sobic010G241900 Sobic005G046400--Sobic010G241900 Sobic009G136800 Sobic009G136800 Sobic005G046400--Sobic009G136800 Sobic002G391400 Sobic002G391400 Sobic006G205700--Sobic002G391400 Sobic006G205700--Sobic003G441800 Sobic004G106100 Sobic004G106100 Sobic006G205700--Sobic004G106100 Sobic003G167300 Sobic003G167300 Sobic006G205700--Sobic003G167300 Sobic006G205700--Sobic010G241900 Sobic006G205700--Sobic005G046400 Sobic007G206800 Sobic007G206800 Sobic006G205700--Sobic007G206800 Sobic006G205700--Sobic003G441601 Sobic003G095100 Sobic003G095100 Sobic006G205700--Sobic003G095100 Sobic004G121600--Sobic003G441700 Sobic004G121600--Sobic001G301000 Sobic004G121600--Sobic006G097900 Sobic004G121600--Sobic005G119900 Sobic004G121600--Sobic003G053200 Sobic004G121600--Sobic003G441800 Sobic008G010500 Sobic008G010500 Sobic004G121600--Sobic008G010500 Sobic001G218400 Sobic001G218400 Sobic004G121600--Sobic001G218400 Sobic004G121800 Sobic004G121800 Sobic004G121600--Sobic004G121800 Sobic005G119900--Sobic003G441700 Sobic005G119900--Sobic001G301000 Sobic005G119900--Sobic001G181600 Sobic005G119900--Sobic004G121600 Sobic005G119900--Sobic003G441800 Sobic005G119900--Sobic003G053200 Sobic003G154500 Sobic003G154500 Sobic005G119900--Sobic003G154500 Sobic005G119900--Sobic009G055300 Sobic005G119900--Sobic001G231800 Sobic007G037600--Sobic003G441800 Sobic003G353200 Sobic003G353200 Sobic007G037600--Sobic003G353200 Sobic007G037600--Sobic010G031700 Sobic002G146000 Sobic002G146000 Sobic007G037600--Sobic002G146000 Sobic007G037600--Sobic003G053200 Sobic007G037600--Sobic004G029400 Sobic007G037600--Sobic001G181600 Sobic007G037600--Sobic001G301000 Sobic007G037600--Sobic006G205700 Sobic009G065700--Sobic003G167300 Sobic009G065700--Sobic003G441800 Sobic009G065700--Sobic002G111900 Sobic009G065700--Sobic010G010000 Sobic009G065700--Sobic002G289500 Sobic001G499900 Sobic001G499900 Sobic009G065700--Sobic001G499900 Sobic009G065700--Sobic003G441601 Sobic009G065700--Sobic010G241900 Sobic001G348400 Sobic001G348400 Sobic009G065700--Sobic001G348400
Octagon: transcription factors


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