Gene annotation
Transcriptome id Sobic.003G441700.2,Sobic.003G441700.1
Synonym Sb03g047140
Functional annotation RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed
UniProt C5XJB7
Pfam PF06830
Panther DB PTHR31656 PTHR31656:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G19430 : late embryogenesis abundant protein-related / LEA protein-related
RAP-DB (Rice) LOC_Os01g73730.1 : RCLEA5 - Root cap and Late embryogenesis related family protein precursor, expressed
MaizeGDB (Corn) Zm00025a011534 , Zm00025a052221 , Zm00025a033481 , Zm00025a040983 , Zm00025a002979 , Zm00025a025854 , Zm00025a029575 , Zm00025a039058 , Zm00025a025852 , Zm00025a025851
Brachypodium KQK11723 , KQJ92264 , KQJ92269 , KQK09956
Barley HORVU3Hr1G075070.1 , HORVU3Hr1G113530.1 , HORVU3Hr1G113530.6 , HORVU3Hr1G113530.4 , HORVU3Hr1G113530.5 , HORVU3Hr1G113530.2 , HORVU3Hr1G113530.3
Wheat TraesCSU02G059100 , TraesCS3A02G296600 , TraesCS1D02G022800 , TraesCS1A02G023300 , TraesCS5D02G330200 , TraesCS3D02G306100 , TraesCS3A02G519700 , TraesCS3D02G526000 , TraesCS3B02G340500 , TraesCS3B02G587300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G119900 reticuline oxidase-like protein precursor, putative, expressed -
2 Sobic.003G053200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
3 Sobic.003G441800 RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed -
4 Sobic.004G121600 expansin precursor, putative, expressed -
5 Sobic.001G301000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expansin precursor, putative, expressed -
6 Sobic.009G055300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase
7 Sobic.001G181600 dehydrogenase/reductase, putative, expressed -
8 Sobic.006G097900 xyloglucan fucosyltransferase, putative, expressed K13681: xyloglucan fucosyltransferase
9 Sobic.001G231800 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
10 Sobic.008G105800 cytochrome P450, putative, expressed -
11 Sobic.010G268700 expansin precursor, putative, expressed -
12 Sobic.004G121800 expansin precursor, putative, expressed -
13 Sobic.001G415100 terpene synthase, putative, expressed -
14 Sobic.001G218400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MATH domain containing protein, expressed -
15 Sobic.003G357700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Laccase LAC7 (At)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
16 Sobic.003G154500 helix-loop-helix DNA-binding domain containing protein, expressed -
17 Sobic.006G230200 TKL_IRAK_DUF26-ld.1 - DUF26 kinases have homology to DUF26 containing loci, expressed -
18 Sobic.005G046400 - -
19 Sobic.003G441601 - -
20 Sobic.007G212000 receptor-like protein kinase precursor, putative, expressed -


Gene co-expression network
sample Sobic003G441700 Sobic003G441700 Sobic005G119900 Sobic005G119900 Sobic003G441700--Sobic005G119900 Sobic003G053200 Sobic003G053200 Sobic003G441700--Sobic003G053200 Sobic003G441800 Sobic003G441800 Sobic003G441700--Sobic003G441800 Sobic004G121600 Sobic004G121600 Sobic003G441700--Sobic004G121600 Sobic001G301000 Sobic001G301000 Sobic003G441700--Sobic001G301000 Sobic009G055300 Sobic009G055300 Sobic003G441700--Sobic009G055300 Sobic001G181600 Sobic001G181600 Sobic003G441700--Sobic001G181600 Sobic006G097900 Sobic006G097900 Sobic003G441700--Sobic006G097900 Sobic001G231800 Sobic001G231800 Sobic003G441700--Sobic001G231800 Sobic005G119900--Sobic003G441700 Sobic005G119900--Sobic001G301000 Sobic005G119900--Sobic001G181600 Sobic005G119900--Sobic004G121600 Sobic005G119900--Sobic003G441800 Sobic005G119900--Sobic003G053200 Sobic003G154500 Sobic003G154500 Sobic005G119900--Sobic003G154500 Sobic005G119900--Sobic009G055300 Sobic005G119900--Sobic001G231800 Sobic003G053200--Sobic003G441800 Sobic003G053200--Sobic003G441700 Sobic003G053200--Sobic001G301000 Sobic003G053200--Sobic004G121600 Sobic010G031700 Sobic010G031700 Sobic003G053200--Sobic010G031700 Sobic003G053200--Sobic005G119900 Sobic004G029400 Sobic004G029400 Sobic003G053200--Sobic004G029400 Sobic003G053200--Sobic001G231800 Sobic007G037600 Sobic007G037600 Sobic003G053200--Sobic007G037600 Sobic003G441800--Sobic003G053200 Sobic003G441800--Sobic003G441700 Sobic003G441601 Sobic003G441601 Sobic003G441800--Sobic003G441601 Sobic005G046400 Sobic005G046400 Sobic003G441800--Sobic005G046400 Sobic006G205700 Sobic006G205700 Sobic003G441800--Sobic006G205700 Sobic003G441800--Sobic004G121600 Sobic003G441800--Sobic005G119900 Sobic003G441800--Sobic007G037600 Sobic009G065700 Sobic009G065700 Sobic003G441800--Sobic009G065700 Sobic004G121600--Sobic003G441700 Sobic004G121600--Sobic001G301000 Sobic004G121600--Sobic006G097900 Sobic004G121600--Sobic005G119900 Sobic004G121600--Sobic003G053200 Sobic004G121600--Sobic003G441800 Sobic008G010500 Sobic008G010500 Sobic004G121600--Sobic008G010500 Sobic001G218400 Sobic001G218400 Sobic004G121600--Sobic001G218400 Sobic004G121800 Sobic004G121800 Sobic004G121600--Sobic004G121800 Sobic001G301000--Sobic001G231800 Sobic001G301000--Sobic008G010500 Sobic001G301000--Sobic004G121600 Sobic001G301000--Sobic003G441700 Sobic001G301000--Sobic005G119900 Sobic001G301000--Sobic003G053200 Sobic010G268700 Sobic010G268700 Sobic001G301000--Sobic010G268700 Sobic010G245400 Sobic010G245400 Sobic001G301000--Sobic010G245400 Sobic001G301000--Sobic006G097900 Sobic006G230200 Sobic006G230200 Sobic009G055300--Sobic006G230200 Sobic006G230100 Sobic006G230100 Sobic009G055300--Sobic006G230100 Sobic008G105800 Sobic008G105800 Sobic009G055300--Sobic008G105800 Sobic002G063700 Sobic002G063700 Sobic009G055300--Sobic002G063700 Sobic001G415100 Sobic001G415100 Sobic009G055300--Sobic001G415100 Sobic007G202480 Sobic007G202480 Sobic009G055300--Sobic007G202480 Sobic004G299500 Sobic004G299500 Sobic009G055300--Sobic004G299500 Sobic005G069332 Sobic005G069332 Sobic009G055300--Sobic005G069332 Sobic005G069166 Sobic005G069166 Sobic009G055300--Sobic005G069166 Sobic001G181600--Sobic003G154500 Sobic001G181600--Sobic005G119900 Sobic001G181600--Sobic003G441700 Sobic001G181600--Sobic006G097900 Sobic001G181600--Sobic001G218400 Sobic001G181600--Sobic009G055300 Sobic007G212000 Sobic007G212000 Sobic001G181600--Sobic007G212000 Sobic001G181600--Sobic007G202480 Sobic007G015000 Sobic007G015000 Sobic001G181600--Sobic007G015000 Sobic006G097900--Sobic004G121600 Sobic006G097900--Sobic010G268700 Sobic006G097900--Sobic003G441700 Sobic006G097900--Sobic001G181600 Sobic006G097900--Sobic001G218400 Sobic005G216600 Sobic005G216600 Sobic006G097900--Sobic005G216600 Sobic001G293100 Sobic001G293100 Sobic006G097900--Sobic001G293100 Sobic006G097900--Sobic003G441800 Sobic006G097900--Sobic005G119900 Sobic001G231800--Sobic001G301000 Sobic001G231800--Sobic008G010500 Sobic001G231800--Sobic010G245400 Sobic001G231800--Sobic005G119900 Sobic001G231800--Sobic003G441700 Sobic001G231800--Sobic004G121600 Sobic001G231800--Sobic003G053200 Sobic001G231800--Sobic010G268700 Sobic003G357700 Sobic003G357700 Sobic001G231800--Sobic003G357700
Octagon: transcription factors


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